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WormBase Tree Display for Gene: WBGene00163512

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Name Class

WBGene00163512SMapS_parentSequenceCbre_Contig18
IdentityVersion1
NameCGC_nameCbn-unc-57From_analysisInferred_from_orthology
Sequence_nameCBN24787
Molecular_nameCBN24787
CBN24787.1
CN38179
Other_nameCBN24787
Public_nameCbn-unc-57
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-unc-57
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:000000211.1135From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
15.0885From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
5.24666From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
6.06561From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
6.33469From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
6.70885From_analysisRNASeq.brenneri.WBls:0000002.control_median
6.76407From_analysisRNASeq.brenneri.WBls:0000002.control_mean
7.083From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
7.25059From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
9.4582From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
28.8029From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
57.6057From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
49.5731From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
69.1192From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
70.3819From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
80.3006From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
87.698From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
WBls:000003824.238From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
25.5452From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
26.8523From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041103.724From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
120.578From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
17.0073From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
22.4213From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
30.5229From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
30.715From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
31.1886From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
49.7744From_analysisRNASeq.brenneri.WBls:0000041.control_mean
51.259From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
51.418From_analysisRNASeq.brenneri.WBls:0000041.control_median
51.5771From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
52.3076From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
56.2197From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
62.4562From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
73.3383From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
93.0751From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
WBls:000010122.4213From_analysisRNASeq.brenneri.total_over_all_stages.control_median
31.3783From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00216879
OrthologWBGene00006791Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00040890Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00060431Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00117351Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00125860Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CSP21.g7630Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2682Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP29.g6658Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g2984Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g22075Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17236Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g21108Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00351.g9604Caenorhabditis angariaFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8509Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00461.g11673Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_14743Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001237Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g16569Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10308110Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00225806Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9341Caenorhabditis bovisFrom_analysisWormBase-Compara
chrI_pilon.g754Caenorhabditis elegansFrom_analysisWormBase-Compara
Cnig_chr_I.g750Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g751Caenorhabditis nigoniFrom_analysisWormBase-Compara
CSP28.g14792Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP31.g499Caenorhabditis uteleiaFrom_analysisWormBase-Compara
WBGene00237374Onchocerca volvulusFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05701Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06261Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08154Oscheius tipulaeFrom_analysisWormBase-Compara
WBGene00259642Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00139053Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00148508Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00149939Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00158063Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00141216Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be located in cytoplasm. Is an ortholog of C. elegans unc-57. In C. elegans, unc-57 is involved in clathrin-dependent endocytosis and necroptotic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCBN24787
Corresponding_CDS_historyCBN24787:np231
Corresponding_transcriptCBN24787.1
Other_sequenceCBC00895_1
CR03029
ASC01350_1
HG03451
Name_isotig05128
BE202311.1
HGC09032_1
CV200640.1
PVC01369_1
JI478196.1
GO252759.1
HS00881
ES568861.1
HS01022
HGC07685_1
XIC01805_1
SSC02734_1
Dviv_isotig33658
TM03699
HG06814
FC555729.1
EY468194.1
TSC10541_1
AS02640
HGC06931_1
HSC01198_1
Oden_isotig17854
Hbac_isotig00816
OVC06445_1
ACC02360_1
JI175156.1
CSC02089_1
MIC05467_1
AS04662
ES568850.1
TMC02148_1
MC02808
HSC01342_1
CRC00315_1
CR03384
HS01288
MCC04218_1
FD516700.1
Acan_isotig08067
FC555660.1
Hbac_isotig00817
HG01072
Oden_isotig28039
MCC02476_1
XI01000
MC00374
CRC02982_1
SS00808
JI172746.1
HSC00854_1
Experimental_infoMicroarray_resultsGPL14142_CBN24787_737-796_0.922_11_C
GPL14142_CBN24787_1047-1106_0.838_71_B
GPL14142_CBN24787_1061-1120_0.963_1_A
MethodGene