WormBase Tree Display for Gene: WBGene00162675

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WBGene00162675	SMap	S_parent	Sequence	Cbre_Contig123
	Identity	Version	1
		Name	CGC_name	Cbn-unc-39	From_analysis	Inferred_from_orthology
			Sequence_name	CBN23950
			Molecular_name	CBN23950
				CBN23950.1
				CN20973
			Other_name	CBN23950
			Public_name	Cbn-unc-39
		Species	Caenorhabditis brenneri
		History	Version_change	1	30 Oct 2008 10:39:28	WBPerson4055	Event	Imported	from NGASP
							Name_change	CGC_name	Cbn-unc-39
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	unc
		RNASeq_FPKM	WBls:0000002	0.975589	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
				0	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
						RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
				4.24695	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
				4.96795	From_analysis	RNASeq.brenneri.WBls:0000002.control_mean
				6.67903	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
				6.88377	From_analysis	RNASeq.brenneri.WBls:0000002.control_median
				7.08851	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
				7.13207	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
				7.24115	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
				7.97458	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
				8.34161	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
			WBls:0000004	14.6674	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
				0	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
				7.3337	From_analysis	RNASeq.brenneri.WBls:0000004.control_mean
						RNASeq.brenneri.WBls:0000004.control_median
			WBls:0000024	0	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
				3.15613	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
				3.45822	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
				3.50859	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
				3.94791	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
				4.15636	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
			WBls:0000038	0.471612	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
				0.472124	From_analysis	RNASeq.brenneri.WBls:0000038.control_mean
						RNASeq.brenneri.WBls:0000038.control_median
				0.472637	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
			WBls:0000041	0.233212	From_analysis	RNASeq.brenneri.WBls:0000041.control_mean
				0.278766	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
				0.321014	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
				0.686312	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
				0.706454	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
				0.707902	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
				1.03094	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
				0	From_analysis	RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
						RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
						RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
						RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
						RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
						RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
						RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
						RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
						RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
						RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
						RNASeq.brenneri.WBls:0000041.control_median
			WBls:0000101	0.321014	From_analysis	RNASeq.brenneri.total_over_all_stages.control_median
				2.22653	From_analysis	RNASeq.brenneri.total_over_all_stages.control_mean
		GO_annotation	00216183
		Ortholog	WBGene00000454	Caenorhabditis elegans	From_analysis	TreeFam
			WBGene00000455	Caenorhabditis elegans	From_analysis	TreeFam
			WBGene00006775	Caenorhabditis elegans	From_analysis	OMA
						TreeFam
						Inparanoid_8
						WormBase-Compara
			WBGene00027265	Caenorhabditis briggsae	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00052748	Caenorhabditis remanei	From_analysis	TreeFam
			WBGene00071518	Caenorhabditis remanei	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00119474	Caenorhabditis japonica	From_analysis	TreeFam
						Inparanoid_8
						WormBase-Compara
			WBGene00123799	Caenorhabditis japonica	From_analysis	TreeFam
			CSP21.g6220	Caenorhabditis parvicauda	From_analysis	WormBase-Compara
			CSP28.g2682	Caenorhabditis panamensis	From_analysis	WormBase-Compara
			CSP29.g11984	Caenorhabditis becei	From_analysis	WormBase-Compara
			CSP32.g14043	Caenorhabditis sulstoni	From_analysis	WormBase-Compara
			CSP38.g14946	Caenorhabditis quiockensis	From_analysis	WormBase-Compara
			CSP39.g8396	Caenorhabditis waitukubuli	From_analysis	WormBase-Compara
			Cang_2012_03_13_00188.g6582	Caenorhabditis angaria	From_analysis	WormBase-Compara
			FL83_22366	Caenorhabditis latens	From_analysis	WormBase-Compara
			FL83_22367	Caenorhabditis latens	From_analysis	WormBase-Compara
			FL83_23480	Caenorhabditis latens	From_analysis	WormBase-Compara
			FL83_23481	Caenorhabditis latens	From_analysis	WormBase-Compara
			GCK72_017520	Caenorhabditis remanei	From_analysis	WormBase-Compara
			GCK72_017521	Caenorhabditis remanei	From_analysis	WormBase-Compara
			OTIPU.nOt.2.0.1.g00345	Oscheius tipulae	From_analysis	WormBase-Compara
			Sp34_50361400	Caenorhabditis inopinata	From_analysis	WormBase-Compara
			WBGene00071517	Caenorhabditis remanei	From_analysis	WormBase-Compara
			WBGene00220783	Brugia malayi	From_analysis	WormBase-Compara
			CBOVI.g714	Caenorhabditis bovis	From_analysis	WormBase-Compara
			chrV_pilon.g16510	Caenorhabditis elegans	From_analysis	WormBase-Compara
			Cni-unc-39	Caenorhabditis nigoni	From_analysis	WormBase-Compara
			Csp5_scaffold_00004.g250	Caenorhabditis sinica	From_analysis	WormBase-Compara
			CSP40.g4601	Caenorhabditis tribulationis	From_analysis	WormBase-Compara
			Csp11.Scaffold630.g19894	Caenorhabditis tropicalis	From_analysis	WormBase-Compara
			CSP31.g25814	Caenorhabditis uteleia	From_analysis	WormBase-Compara
			CSP26.g12807	Caenorhabditis zanzibari	From_analysis	WormBase-Compara
			WBGene00242653	Onchocerca volvulus	From_analysis	WormBase-Compara
			Pan_g5854	Panagrellus redivivus	From_analysis	WormBase-Compara
			WBGene00258871	Strongyloides ratti	From_analysis	WormBase-Compara
			WBGene00285982	Trichuris muris	From_analysis	WormBase-Compara
			WBGene00296736	Trichuris muris	From_analysis	WormBase-Compara
		Paralog	WBGene00148719	Caenorhabditis brenneri	From_analysis	TreeFam
						WormBase-Compara
						GeneACeDB-Compara
			WBGene00151855	Caenorhabditis brenneri	From_analysis	TreeFam
						WormBase-Compara
						GeneACeDB-Compara
			WBGene00190442	Caenorhabditis brenneri	From_analysis	TreeFam
						WormBase-Compara
						GeneACeDB-Compara
			WBGene00191655	Caenorhabditis brenneri	From_analysis	WormBase-Compara
						GeneACeDB-Compara
			WBGene00194157	Caenorhabditis brenneri	From_analysis	WormBase-Compara
						GeneACeDB-Compara
		Structured_description	Automated_description	Predicted to enable DNA binding activity. Is an ortholog of C. elegans unc-39. In C. elegans, unc-39 is involved in several processes, including egg-laying behavior; generation of neurons; and regulation of locomotion.	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS292 version of WormBase
					Date_last_updated	24 Apr 2024 00:00:00
	Molecular_info	Corresponding_CDS	CBN23950
		Corresponding_transcript	CBN23950.1
		Other_sequence	Acan_isotig06578
			Dviv_isotig15575
			Dviv_isotig15576
			Acan_isotig06577
			Oden_isotig18067
			Tcir_isotig25512
			Oden_isotig18066
			JI211494.1
	Experimental_info	Microarray_results	GPL14142_CBN23950_546-605_0.919_9_C
			GPL14142_CBN23950_771-830_0.822_60_B
			GPL14142_CBN23950_850-909_0.915_12_A
	Method	Gene