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WormBase Tree Display for Gene: WBGene00162587

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Name Class

WBGene00162587SMapS_parentSequenceCbre_Contig23
IdentityVersion2
NameCGC_nameCbn-sde-2.1From_analysisInferred_from_orthology
Sequence_nameCBN23862
Molecular_nameCBN23862
CBN23862.1
CN15847
Public_nameCbn-sde-2.1
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:52WBPerson4055EventImportedfrom NGASP
204 Jun 2020 14:38:22WBPerson1983Name_changeCGC_nameCbn-sde-2.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsde
RNASeq_FPKMWBls:000000213.5434From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
2.85896From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
3.03424From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
4.84294From_analysisRNASeq.brenneri.WBls:0000002.control_mean
5.32442From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
5.46069From_analysisRNASeq.brenneri.WBls:0000002.control_median
5.59696From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
5.63231From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
5.73851From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
6.70056From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
WBls:000000418.0324From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
36.0649From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002411.5735From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
14.8415From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
32.6248From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
34.6513From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
35.0304From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
WBls:000003812.8988From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
15.5378From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
18.1767From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:000004110.3354From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
10.9866From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
17.5013From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
30.0388From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
32.0569From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
3.20988From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
3.79496From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
5.02897From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
6.86775From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
7.05299From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
7.44192From_analysisRNASeq.brenneri.WBls:0000041.control_median
7.83084From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
8.19644From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
8.83143From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
9.48327From_analysisRNASeq.brenneri.WBls:0000041.control_mean
WBls:00001015.73851From_analysisRNASeq.brenneri.total_over_all_stages.control_median
8.62265From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00009996Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00032626Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00052844Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00129623Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g1063Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1891Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g517Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g5227Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18776Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1118Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15651Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14118Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13915Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8647Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7708Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00225.g7378Caenorhabditis angariaFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14132Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00119.g4857Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_018619Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00224573Brugia malayiFrom_analysisWormBase-Compara
chrV_pilon.g16293Caenorhabditis elegansFrom_analysisWormBase-Compara
Sp34_50164700Caenorhabditis inopinataFrom_analysisWormBase-Compara
FL83_03774Caenorhabditis latensFrom_analysisWormBase-Compara
Cni-F53F4.14Caenorhabditis nigoniFrom_analysisWormBase-Compara
WBGene00243732Onchocerca volvulusFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03118Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g2657Panagrellus redivivusFrom_analysisWormBase-Compara
WBGene00290223Trichuris murisFrom_analysisWormBase-Compara
WBGene00301168Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00141508Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00158907Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00156411Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Replication stress response SDE2 C-terminal; Silencing defective 2 N-terminal ubiquitin domain; and Sde2, N-terminal ubiquitin domain. Is an ortholog of C. elegans sde-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCBN23862
Corresponding_transcriptCBN23862.1
Other_sequenceCBC10955_1
PE00057
BMC10519_1
EX543724.1
BXC04788_1
JI169721.1
Oden_isotig20349
EY466255.1
JI462764.1
EY458783.1
RSC01397_1
BMC05867_1
RS06270
EX541685.1
BXC02256_1
Tcol_isotig25704
PEC00310_1
MethodGene