WormBase Tree Display for Gene: WBGene00158857

WBGene00158857 SMap: S_parent: Sequence: Cbre_Contig0
  Identity: Version: 2
    Name: CGC_name: Cbn-syx-3 From_analysis: Inferred_from_orthology
      Sequence_name: CBN20132
      Molecular_name: CBN20132
        CBN20132.1
        CN10567
      Other_name: CBN20132
        Cbn-syn-1 From_analysis: Inferred_from_orthology
      Public_name: Cbn-syx-3
    Species: Caenorhabditis brenneri
    History: Version_change: 1 30 Oct 2008 10:39:28 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cbn-syn-1
        2 16 Apr 2010 14:36:35 WBPerson2970 Name_change: CGC_name: Cbn-syx-3
                Other_name: Cbn-syn-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syx
    RNASeq_FPKM: WBls:0000002 (11)
      WBls:0000004 37.6164 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
        5.77668 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
        69.4561 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
      WBls:0000024 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        23.0452 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        24.3974 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        29.7286 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        31.374 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        31.7013 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
      WBls:0000038 11.6115 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
        12.1063 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        12.6011 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
      WBls:0000041 (15)
      WBls:0000101 5.50738 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
        9.56771 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
    GO_annotation: 00213043
      00213044
    Ortholog (29)
    Paralog: WBGene00152874 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00155736 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00155789 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00156518 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00158202 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00141035 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00154002 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00159566 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00162862 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00193180 Caenorhabditis brenneri From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of C. elegans syx-3. In C. elegans, syx-3 is involved in positive regulation of defecation and regulation of muscle contraction. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: CBN20132
    Corresponding_transcript: CBN20132.1
  Experimental_info: Microarray_results: GPL14142_CBN20132_246-305_0.903_20_C
      GPL14142_CBN20132_608-667_0.934_4_B
      GPL14142_CBN20132_877-936_0.843_55_A
  Method: Gene