WormBase Tree Display for Gene: WBGene00152874

WBGene00152874 SMap: S_parent: Sequence: Cbre_Contig134
  Identity: Version: 2
    Name: CGC_name: Cbn-syx-4.1 From_analysis: Inferred_from_orthology
      Sequence_name: CBN14149
      Molecular_name: CBN14149
        CBN14149.1
        CN16784
      Other_name: CBN14149
        Cbn-syn-4 From_analysis: Inferred_from_orthology
      Public_name: Cbn-syx-4.1
    Species: Caenorhabditis brenneri
    History: Version_change: 1 30 Oct 2008 10:39:28 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cbn-syn-4
        2 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cbn-syx-4.1
                Other_name: Cbn-syn-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syx
    RNASeq_FPKM: WBls:0000002 0.52239 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
        0.600005 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
        0.692953 From_analysis: RNASeq.brenneri.WBls:0000002.control_median
        0.785901 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        0.912827 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
        1.35697 From_analysis: RNASeq.brenneri.WBls:0000002.control_mean
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
        2.45225 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
        3.89898 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
        4.39735 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
      WBls:0000004 19.4717 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        38.9434 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
      WBls:0000024 0.640321 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        0.647565 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        1.06428 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        1.38856 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        1.43971 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
      WBls:0000038 1.45502 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        2.61363 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        3.77223 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 (16)
      WBls:0000101 3.89898 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
        8.54711 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
    GO_annotation: 00208265
      00208266
    Ortholog (29)
    Paralog: WBGene00155736 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00158857 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00156518 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00155789 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00158202 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00159566 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00162862 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00193180 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00141035 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00154002 Caenorhabditis brenneri From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in vesicle-mediated transport. Predicted to be located in membrane. Is an ortholog of C. elegans syx-4. In C. elegans, syx-4 is involved in cortical granule exocytosis; positive regulation of cytokinesis; and regulation of exocytosis. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: CBN14149
    Corresponding_transcript: CBN14149.1
  Experimental_info: Microarray_results: GPL14142_CBN14149_436-495_0.933_6_A
  Method: Gene