WormBase Tree Display for Gene: WBGene00149662

WBGene00149662 SMap: S_parent: Sequence: Cbre_Contig194
  Identity: Version: 2
    Name: CGC_name: Cbn-egl-18 From_analysis: Inferred_from_orthology
      Sequence_name: CBN10937
      Molecular_name: CBN10937
        CBN10937.1
        CN31151
      Public_name: Cbn-egl-18
    Species: Caenorhabditis brenneri
    History: Version_change: 1 01 Oct 2008 13:29:51 WBPerson4055 Event: Imported: from NGASP
        2 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cbn-egl-18
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: egl
    RNASeq_FPKM: WBls:0000002 1.57688 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
            RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
        2.56174 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
        2.86436 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
        3.26315 From_analysis: RNASeq.brenneri.WBls:0000002.control_mean
        3.36562 From_analysis: RNASeq.brenneri.WBls:0000002.control_median
        3.86688 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
        4.33378 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
        5.39778 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
        5.85207 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
        6.17805 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
      WBls:0000004 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        22.4317 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
        44.8634 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
      WBls:0000024 15.4868 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        28.6044 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        28.7844 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        31.2463 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        37.1522 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
      WBls:0000038 10.6853 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        10.7006 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        10.7159 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 10.0972 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191970
        1.8652 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100773
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100774
            RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100775
            RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX103654
            RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191965
            RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX103657
        2.38995 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100776
        3.17781 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100780
        3.31057 From_analysis: RNASeq.brenneri.WBls:0000041.control_median
        3.44333 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100777
        3.46707 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100779
        3.65807 From_analysis: RNASeq.brenneri.WBls:0000041.control_mean
        4.04955 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100778
        5.1223 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191968
        7.78044 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191967
        8.0312 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191969
        9.10514 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191966
      WBls:0000101 3.44333 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
        5.07824 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
    GO_annotation: 00205689
      00205690
      00205691
      00205692
      00205693
    Ortholog: WBGene00001186 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00034302 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00064557 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00089767 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00138069 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      CSP21.g13177 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP28.g524 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g21704 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7339 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17390 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g9395 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cni-egl-18 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00214.g7196 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_15658 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016306 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrIV_pilon.g9743 Caenorhabditis elegans From_analysis: WormBase-Compara
      Sp34_40041710 Caenorhabditis inopinata From_analysis: WormBase-Compara
      CSP40.g23962 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10692 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      CSP26.g14022 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      WBGene00255925 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00139710 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00143256 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00144874 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00150364 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00155594 Caenorhabditis brenneri From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is an ortholog of C. elegans egl-18. In C. elegans, egl-18 is involved in cell fate specification; membrane fusion; and nematode larval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: CBN10937
    Corresponding_CDS_history: CBN10937:np197
    Corresponding_transcript: CBN10937.1
    Other_sequence: JI171952.1
      CJC00785_1
      CRC03801_1
      JI461031.1
  Experimental_info: Microarray_results: GPL14142_CBN10937_672-731_0.926_3_C
      GPL14142_CBN10937_802-861_0.878_28_B
      GPL14142_CBN10937_1100-1159_0.917_8_A
  Method: Gene