WormBase Tree Display for Gene: WBGene00129535

WBGene00129535 SMap: S_parent: Sequence: Cjap.Contig17308
  Identity: Version: 2
    Name: CGC_name: Cjp-pha-4 From_analysis: Inferred_from_orthology
      Sequence_name: CJA10331
      Molecular_name: CJA10331
        CJA10331.1
        JA54960
      Public_name: Cjp-pha-4
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:22 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-pha-4
        2 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pha
    RNASeq_FPKM: WBls:0000004 74.3294 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 26.3815 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 13.4097 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        15.6018 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        17.7938 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 3.2669 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        3.41261 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        3.96795 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        4.11364 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        4.37973 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        4.64582 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        5.2063 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        6.7235 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        7.68994 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        7.83007 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
      WBls:0000101 13.3511 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
        6.7235 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
    GO_annotation: 00189538
      00189539
      00189540
    Ortholog (47)
    Paralog: WBGene00128005 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00137835 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00134152 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00135423 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00137633 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00124100 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00125678 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00132586 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00138617 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00210959 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity and sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans pha-4. In C. elegans, pha-4 is involved in several processes, including determination of adult lifespan; positive regulation of metabolic process; and response to caloric restriction. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: CJA10331
    Corresponding_transcript: CJA10331.1
    Other_sequence (59)
  Experimental_info: Expr_pattern: Expr1078084
      Expr1089832
    Microarray_results: GPL14145_CJA00794_140-199_0.950_1_A
      GPL14145_CJA10331_506-565_0.872_51_C
      GPL14145_CJA10331_694-753_0.933_6_B
      GPL14145_CJA10331_965-1024_0.742_122_A
  Method: Gene