WormBase Tree Display for Gene: WBGene00089965
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WBGene00089965 | SMap | S_parent | Sequence | PPA_ChrI | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 7 | |||||||
Name | Sequence_name | PPA00411 | |||||||
Molecular_name | PPA00411 | ||||||||
PPA00411.1 | |||||||||
PP71105 | |||||||||
Other_name (2) | |||||||||
Public_name | PPA00411 | ||||||||
Species | Pristionchus pacificus | ||||||||
History | Version_change | 1 | 06 Aug 2008 09:05:03 | WBPerson4055 | Event | Imported | from NGASP | ||
2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-smc-4 | ||||
3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
4 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-smc-4 | ||||
5 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
6 | 04 Feb 2020 15:43:56 | WBPerson1983 | Name_change | CGC_name | Ppa-smc-4 | ||||
7 | 04 Jun 2020 14:38:22 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
RNASeq_FPKM | WBls:0000032 | 0.53825 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
WBls:0000101 | 0.53825 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
0.603163 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
1.27124 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
GO_annotation | 00167967 | ||||||||
00167968 | |||||||||
00167969 | |||||||||
Ortholog (70) | |||||||||
Paralog | WBGene00098666 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
WBGene00107491 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00109381 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00112336 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00114841 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00203907 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable ATP binding activity. Predicted to be involved in chromosome organization. Predicted to be located in chromosome. Is an ortholog of C. elegans dpy-27 and smc-4. In C. elegans, dpy-27 is involved in dosage compensation by hypoactivation of X chromosome. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | PPA00411 | |||||||
Corresponding_transcript | PPA00411.1 | ||||||||
Other_sequence | Tcir_isotig02789 | ||||||||
PPC14761_1 | |||||||||
TVC01360_1 | |||||||||
BXC07601_1 | |||||||||
TV01530 | |||||||||
Tcir_isotig02788 | |||||||||
Experimental_info | Microarray_results (12) | ||||||||
Expression_cluster | WBPaper00041466:PP_germline-ablation_regulated | ||||||||
Remark | [190208 pad] The CGC name Ppa-smc-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
[191001 pad] The CGC name Ppa-smc-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
[200603 pad] The CGC name Ppa-smc-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
Method | Gene |