WormBase Tree Display for Gene: WBGene00089965

WBGene00089965 SMap: S_parent: Sequence: PPA_ChrI
  Identity: Version: 7
    Name: Sequence_name: PPA00411
      Molecular_name: PPA00411
        PPA00411.1
        PP71105
      Other_name: GENEPREDICTION_SNAP300000057541
        UMA-S57-42.27 Person_evidence: WBPerson606
      Public_name: PPA00411
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:03 WBPerson4055 Event: Imported: from NGASP
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Ppa-smc-4
        3 08 Feb 2019 15:42:28 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:25 WBPerson1983 Name_change: CGC_name: Ppa-smc-4
        5 01 Oct 2019 10:47:49 WBPerson1983 Name_change: CGC_name: Removed
        6 04 Feb 2020 15:43:56 WBPerson1983 Name_change: CGC_name: Ppa-smc-4
        7 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Removed
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000032 0.53825 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0.53825 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        0.603163 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        1.27124 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00167967
      00167968
      00167969
    Ortholog (70)
    Paralog: WBGene00098666 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00107491 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00109381 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00112336 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00114841 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00203907 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ATP binding activity. Predicted to be involved in chromosome organization. Predicted to be located in chromosome. Is an ortholog of C. elegans dpy-27 and smc-4. In C. elegans, dpy-27 is involved in dosage compensation by hypoactivation of X chromosome. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: PPA00411
    Corresponding_transcript: PPA00411.1
    Other_sequence: Tcir_isotig02789
      PPC14761_1
      TVC01360_1
      BXC07601_1
      TV01530
      Tcir_isotig02788
  Experimental_info: Microarray_results (12)
    Expression_cluster: WBPaper00041466:PP_germline-ablation_regulated
  Remark: [190208 pad] The CGC name Ppa-smc-4 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [191001 pad] The CGC name Ppa-smc-4 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [200603 pad] The CGC name Ppa-smc-4 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene