WormBase Tree Display for Gene: WBGene00064029

WBGene00064029 SMap: S_parent: Sequence: Crem_Contig61
  Identity: Version: 4
    Name: CGC_name: Cre-soc-2 From_analysis: Inferred_from_orthology
      Sequence_name: CRE13532
      Molecular_name: CRE13532
        CRE13532.1
        RP09745
      Other_name: cr01.sctg44.wum.90
        cr01.sctg44.wum.90.2
      Public_name: Cre-soc-2
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:27 WBPerson1847 Event: Created
        2 03 Jul 2008 11:45:55 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE13532
                Other_name: cr01.sctg44.wum.90
        3 03 Jul 2008 11:48:41 WBPerson4055 Event: Acquires_merge: WBGene00064030
              Name_change: Other_name: cr01.sctg44.wum.90.2
        4 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cre-soc-2
      Acquires_merge: WBGene00064030
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: soc
    RNASeq_FPKM: WBls:0000004 10.996 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        11.6758 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        12.3557 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 21.2383 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        24.3888 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        2.53424 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        25.4688 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        26.5489 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        31.4814 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 12.1696 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        14.9284 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        17.2693 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        4.31107 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
      WBls:0000041 11.1411 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        11.2606 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        11.8907 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        12.0166 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        12.7725 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        12.7845 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        13.432 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        9.95332 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
      WBls:0000063 (12)
      WBls:0000101 10.4747 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        11.6606 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (33)
    Paralog: WBGene00057088 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00073296 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00051549 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00052663 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00055394 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00057464 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00077422 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00054856 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Leucine rich repeat; Leucine-rich repeat domain superfamily; Leucine-rich repeat, typical subtype; and Leucine-rich repeat. Is an ortholog of C. elegans soc-2. In C. elegans, soc-2 is involved in several processes, including fibroblast growth factor receptor signaling pathway; positive regulation of Ras protein signal transduction; and vulval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: CRE13532
    Corresponding_transcript: CRE13532.1
    Other_sequence (21)
  Method: Gene