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WormBase Tree Display for Gene: WBGene00063872

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Name Class

WBGene00063872SMapS_parentSequenceCrem_Contig126
IdentityVersion4
NameCGC_nameCre-pdzd-8.1From_analysisInferred_from_orthology
Sequence_nameCRE25778
Molecular_nameCRE25778
CRE25778.1
RP34044
Other_namecr01.sctg43.wum.52
Cre-pdzd-8From_analysisInferred_from_orthology
Public_nameCre-pdzd-8.1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:27WBPerson1847EventCreated
203 Jul 2008 11:45:54WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE25778
Other_namecr01.sctg43.wum.52
304 Feb 2020 15:43:57WBPerson1983Name_changeCGC_nameCre-pdzd-8
428 May 2021 19:05:19WBPerson1983Name_changeCGC_nameCre-pdzd-8.1
Other_nameCre-pdzd-8
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpdzd
RNASeq_FPKMWBls:000000415.7876From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
16.3497From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
16.9118From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:000002412.2916From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
12.6892From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
14.6916From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
15.3891From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
15.4771From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
15.7606From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
16.0575From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
16.314From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
16.8248From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
16.9436From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
17.3706From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
18.2943From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
18.4007From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
18.6035From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
18.7993From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
19.1158From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
19.1703From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
19.2822From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
19.7653From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
20.0335From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
20.1728From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
20.3562From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
20.9962From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
21.1434From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
21.5397From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
21.6682From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
21.6968From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
22.2221From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
22.2541From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
22.3969From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
22.4929From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
22.5323From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
22.5597From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
23.0746From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
23.1757From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
23.4776From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
23.6201From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
24.3623From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
24.6213From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
24.9795From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
25.5803From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
25.5933From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
26.8761From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
27.9077From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
29.052From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
30.4667From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
31.1485From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
31.6519From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
32.4419From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
33.7133From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
36.0057From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
37.3935From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
38.7455From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
WBls:000002711.3135From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
11.5102From_analysisRNASeq.remanei.WBls:0000027.control_median
11.7069From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
12.479From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
1.40323From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
9.22566From_analysisRNASeq.remanei.WBls:0000027.control_mean
WBls:00000382.24183From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
5.80852From_analysisRNASeq.remanei.WBls:0000038.control_mean
6.87637From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
RNASeq.remanei.WBls:0000038.control_median
8.30737From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
WBls:000004120.7548From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
25.6987From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
26.6009From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
31.8865From_analysisRNASeq.remanei.WBls:0000041.control_mean
32.5132From_analysisRNASeq.remanei.WBls:0000041.control_median
38.4256From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
38.6246From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
41.2146From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
WBls:00000632.99491From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
3.29788From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
3.95252From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
4.33408From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
4.63759From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
4.80748From_analysisRNASeq.remanei.WBls:0000063.control_median
4.9252From_analysisRNASeq.remanei.WBls:0000063.control_mean
4.97737From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
5.72943From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
5.76804From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
5.91078From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
7.6494From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
WBls:000010112.5999From_analysisRNASeq.remanei.total_over_all_stages.control_mean
7.26289From_analysisRNASeq.remanei.total_over_all_stages.control_median
GO_annotation00153962
00153963
00153964
OrthologWBGene00008274Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00040433Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00092903Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00136554Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WBGene00192741Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00193464Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00269364Brugia malayiFrom_analysisWormBase-Compara
WBGene00137694Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00241500Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g11629Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10422Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2991Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g2993Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12604Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g12606Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g4073Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4075Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g18293Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18295Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12995Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g12997Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g210Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g212Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1239Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g1241Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g20445Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1373Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g1375Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_11719.g23387Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_15483.g25052Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_IV.g13076Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_IV.g13079Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10872Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10873Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00611.g13542Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00611.g13543Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_09955Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013370Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_013372Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13665Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g16983Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40349500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11206Caenorhabditis elegansFrom_analysisWormBase-Compara
chrIV_pilon.g11208Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00267100Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289413Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00076171Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00073520Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00085887Caenorhabditis remaneiFrom_analysisWormBase-Compara
GeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in mitochondrial calcium ion homeostasis and mitochondrion-endoplasmic reticulum membrane tethering. Predicted to be located in mitochondria-associated endoplasmic reticulum membrane. Is an ortholog of C. elegans pdzd-8.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCRE25778
Corresponding_transcriptCRE25778.1
Other_sequenceACC29592_1
CR04805
JI483073.1
CRC08562_1
Dviv_isotig27124
Dviv_isotig05869
EX549561.1
EX547759.1
MethodGene