WormBase Tree Display for Gene: WBGene00052663

WBGene00052663 SMap: S_parent: Sequence: Crem_Contig5
  Identity: Version: 3
    Name: CGC_name: Cre-let-413 From_analysis: Inferred_from_orthology
      Sequence_name: CRE27178
      Molecular_name: CRE27178
        CRE27178.1
        RP47056
      Other_name: cr01.sctg1.wum.535
      Public_name: Cre-let-413
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:25 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:48 WBPerson2970 Name_change: CGC_name: Cre-let-413
        3 03 Jul 2008 11:44:36 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE27178
                Other_name: cr01.sctg1.wum.535
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: let
    RNASeq_FPKM: WBls:0000004 61.9614 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        62.6231 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        63.2847 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 29.4794 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        29.7547 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        34.7471 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        40.0147 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        42.6287 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        6.89616 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 10.915 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        17.9789 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        20.814 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        22.2076 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 11.9973 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        13.1102 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        13.4412 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        28.7831 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        29.0607 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        44.1249 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        44.5792 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        47.1114 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
      WBls:0000063 (12)
      WBls:0000101 19.3533 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        25.3595 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (38)
    Paralog: WBGene00051549 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00055394 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00057464 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00064029 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00073296 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00077422 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00054856 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Leucine rich repeat; PDZ domain; Leucine-rich repeat; PDZ superfamily; Leucine-rich repeat domain superfamily; and Leucine-rich repeat, typical subtype. Is an ortholog of C. elegans let-413. In C. elegans, let-413 is involved in several processes, including adherens junction assembly; embryonic digestive tract morphogenesis; and maintenance of epithelial cell apical/basal polarity. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: CRE27178
    Corresponding_transcript: CRE27178.1
    Other_sequence (16)
  Experimental_info: Expr_pattern: Expr1103348
    Microarray_results: GPL14146_CRE27178_1126-1185_0.821_107_C
      GPL14146_CRE27178_1230-1289_0.877_51_A
      GPL14146_CRE27178_1502-1561_0.888_44_B
  Method: Gene