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WormBase Tree Display for Gene: WBGene00039143

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Name Class

WBGene00039143SMapS_parentSequencecb25.fpc4152
IdentityVersion2
NameCGC_nameCbr-elt-1From_analysisInferred_from_orthology
Sequence_nameCBG20056
Molecular_nameCBG20056
CBG20056.1
CBP32242
Other_nameCBG_20056Accession_evidenceNDBHE601481
Public_nameCbr-elt-1
DB_infoDatabaseNDBlocus_tagCBG_20056
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-elt-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classelt
RNASeq_FPKMWBls:000000213.0187From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.5029From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
14.7603From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
9.79276From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
11.9543From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.1478From_analysisRNASeq.briggsae.WBls:0000002.control_median
8.76117From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003150.938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
156.077From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
161.216From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
137.174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
149.776From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004101.153From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
104.01From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
106.868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
115.751From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
116.462From_analysisRNASeq.briggsae.WBls:0000004.control_mean
128.12From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
130.419From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:000002415.406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
20.3641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
22.4573From_analysisRNASeq.briggsae.WBls:0000024.control_median
22.8425From_analysisRNASeq.briggsae.WBls:0000024.control_mean
24.5504From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
31.0494From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
5.33633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
6.29781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
7.94844From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
5.32301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
6.07148From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
7.38246From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
WBls:000002712.3374From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.98034From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
8.97424From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.60498From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
10.0945From_analysisRNASeq.briggsae.WBls:0000027.control_median
10.5841From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
9.37671From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003526.3697From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.0122From_analysisRNASeq.briggsae.WBls:0000038.control_mean
10.7016From_analysisRNASeq.briggsae.WBls:0000038.control_median
11.7625From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
15.6026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.04304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
9.64069From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004114.9168From_analysisRNASeq.briggsae.WBls:0000041.control_mean
33.4005From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
7.66513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
9.21613From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
9.30075From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.38538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
15.8246From_analysisRNASeq.briggsae.WBls:0000041.control_median
18.518From_analysisRNASeq.briggsae.WBls:0000041.control_mean
22.2638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
29.1768From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000633.2794From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.72543From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
4.45164From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
4.6247From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.24228From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
6.42477From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
4.10315From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
4.27739From_analysisRNASeq.briggsae.WBls:0000063.control_median
4.53778From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010111.7625From_analysisRNASeq.briggsae.total_over_all_stages.control_median
28.508From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
13.4201From_analysisRNASeq.briggsae.total_over_all_stages.control_median
37.1865From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00137358
00137359
00137360
00137361
00137362
OrthologWBGene00001249Caenorhabditis elegansFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00072928Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00143256Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00139710Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00119691Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CBOVI.g8640Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g20021Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21165Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8082Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7948Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP38.g994Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28904Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
Csp11.Scaffold521.g2841Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00186.g6571Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00616.g13607Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_11898Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013472Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g22783Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40340510Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11360Caenorhabditis elegansFrom_analysisWormBase-Compara
Cni-elt-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
CSP21.g13177Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP32.g14542Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP40.g20109Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP39.g21032Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
WBGene00089767Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00255925Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00029417Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032529Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034302Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034303Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036945Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is an ortholog of C. elegans elt-1. In C. elegans, elt-1 is involved in several processes, including epidermal cell fate specification; regulation of transcription by RNA polymerase II; and spermatid development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCBG20056
Corresponding_CDS_historyCBG20056:bp194
Corresponding_transcriptCBG20056.1
Other_sequenceSRC01534_1
CR10330
FC817178.1
XIC01077_1
MAC01468_1
JI168581.1
MA02133
CR10329
Oden_isotig19079
XI02252
CRC02113_1
FC815669.1
Dviv_isotig14640
Acan_isotig12119
SR02534
XI00460
Dviv_isotig14639
XIC03561_1
Experimental_infoExpr_patternExpr1064019
Microarray_resultsGPL8303_CB6_WBGene00039143_A
GPL8303_CB6_WBGene00039143_B
GPL8303_CB6_WBGene00039143_C
GPL8303_CB6_WBGene00039143_D
GPL8303_CB6_WBGene00039143_E
GPL14143_CBG20056_391-450_0.855_17_C
GPL14143_CBG20056_900-959_0.865_13_B
GPL14143_CBG20056_989-1048_0.928_3_A
MethodGene