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WormBase Tree Display for Gene: WBGene00032529

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Name Class

WBGene00032529SMapS_parentSequencecb25.fpc2454b
IdentityVersion2
NameCGC_nameCbr-end-1From_analysisInferred_from_orthology
Sequence_nameCBG11413
Molecular_nameCBG11413
CBG11413.1
CBP08809
Other_nameCBG_11413Accession_evidenceNDBHE600908
Public_nameCbr-end-1
DB_infoDatabaseNDBlocus_tagCBG_11413
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:02WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-end-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classend
RNASeq_FPKMWBls:00000020.120205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.274305From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.349687From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.353022From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.351355From_analysisRNASeq.briggsae.WBls:0000002.control_median
0.351855From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.584508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000310.2513From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
10.4239From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
10.5965From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
10.0623From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
10.3034From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000045.57925From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
6.56216From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
7.54507From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
5.68271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
5.74296From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
6.26612From_analysisRNASeq.briggsae.WBls:0000004.control_mean
6.78063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:00000240.053972From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
0.073612From_analysisRNASeq.briggsae.WBls:0000024.control_median
0.076492From_analysisRNASeq.briggsae.WBls:0000024.control_mean
0.093252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
0.158744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
0.525218From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
1.45319From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
2.09561From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
WBls:00000270From_analysisRNASeq.briggsae.WBls:0000027.control_mean
RNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.047196From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.188782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000350.068796From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.052459From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0.071015From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.073062From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.07511From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.081293From_analysisRNASeq.briggsae.WBls:0000038.control_mean
0.126589From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:00000410.19516From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.361618From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.412911From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.413087From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.413263From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.425137From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.187917From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
0.331017From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.351713From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
0.382312From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630.070059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.21788From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.25729From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.300668From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.461383From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.178676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.211346From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.217983From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001010.126589From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.31141From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.191971From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.78398From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130688
00130689
00130690
00130691
00130692
Ortholog (22)
ParalogWBGene00029417Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034302Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034303Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036945Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039143Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionCbr-end-1 encodes a GATA-type transcription factor that is orthologous to C. elegans end-1; Cbr-end-1 functions redundantly with Cbr-end-3.1 and Cbr-end-3.2 to specify endoderm development; expression of Cbr-end-1 in C. elegans animals deficient for the endoderm determining region (EDR) of the genome is sufficient to restore endoderm development.Paper_evidenceWBPaper00026622
Curator_confirmedWBPerson1843
Date_last_updated27 Jan 2012 00:00:00
Automated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is an ortholog of C. elegans end-1. In C. elegans, end-1 is involved in endodermal cell fate specification and positive regulation of transcription by RNA polymerase II.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCBG11413
Corresponding_CDS_historyCBG11413:bp194
CBG11413:bp255
Corresponding_transcriptCBG11413.1
Experimental_infoExpr_patternExpr1058853
Microarray_resultsGPL8303_CB6_WBGene00032529_A
GPL8303_CB6_WBGene00032529_B
GPL8303_CB6_WBGene00032529_C
GPL8303_CB6_WBGene00032529_D
GPL8303_CB6_WBGene00032529_E
GPL14143_CBG11413_193-252_0.933_8_C
GPL14143_CBG11413_356-415_0.842_29_A
GPL14143_CBG11413_477-536_0.940_6_B
ReferenceWBPaper00026622
WBPaper00032323
MethodGene