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WormBase Tree Display for Gene: WBGene00028506

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Name Class

WBGene00028506SMapS_parentSequencecb25.fpc0143b
IdentityVersion2
NameCGC_nameCbr-hdl-1From_analysisInferred_from_orthology
Sequence_nameCBG06198
Molecular_nameCBG06198
CBG06198.1
CBP41200
Other_nameCBG_06198Accession_evidenceNDBHE600986
Public_nameCbr-hdl-1
DB_infoDatabaseNDBlocus_tagCBG_06198
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-hdl-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhdl
AlleleWBVar00111313
RNASeq_FPKMWBls:00000020.15123From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.386381From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.46375From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.544163From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.128032From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.30749From_analysisRNASeq.briggsae.WBls:0000002.control_median
0.321794From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.120089From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
0.14617From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.172252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0.097448From_analysisRNASeq.briggsae.WBls:0000003.control_mean
3e-06From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.27795From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.310775From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.343599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
0.08633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.288894From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.364926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.371666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:00000240.110317From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
0.177272From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
0.186396From_analysisRNASeq.briggsae.WBls:0000024.control_median
0.195521From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
0.205216From_analysisRNASeq.briggsae.WBls:0000024.control_mean
0.337755From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
WBls:00000270.040435From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.121304From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
RNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.014028From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.028056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
0.03734From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000350.346948From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.045024From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0.142383From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.255466From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.368549From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.13971From_analysisRNASeq.briggsae.WBls:0000038.control_mean
4.0029From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.003655From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.007311From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
11.7746From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.94548From_analysisRNASeq.briggsae.WBls:0000041.control_mean
11.8598From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
12.5919From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
5.89095From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.03894From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:00000632.15871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
2.94416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.08152From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.08769From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
3.36143From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.53508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.716251From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
2.92057From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.01284From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001010.195521From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.25897From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.236735From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.64887From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00126774
00126775
00126776
00126777
00126778
Contained_in_operonCBOPA0194
Ortholog (28)
ParalogWBGene00024028Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030647Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031909Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034615Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035897Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036903Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037453Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00038467Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042089Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in amino acid metabolic process. Is an ortholog of C. elegans hdl-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCBG06198
Corresponding_CDS_historyCBG06198:bp194
CBG06198:bp255
Corresponding_transcriptCBG06198.1
Experimental_infoExpr_patternExpr1066295
Microarray_resultsGPL8303_CB6_WBGene00028506_A
GPL8303_CB6_WBGene00028506_B
GPL14143_CBG06197_19-78_0.822_69_A
GPL14143_CBG06198_2270-2329_0.930_8_C
GPL14143_CBG06198_2410-2469_0.900_21_A
GPL14143_CBG06198_2539-2598_0.925_11_B
Expression_clusterWBPaper00058955:heatshock_upregulated_CBG
WBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene