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WormBase Tree Display for Gene: WBGene00026814

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Name Class

WBGene00026814SMapS_parentSequencecb25.fpc0071c2
IdentityVersion2
NameCGC_nameCbr-rnt-1From_analysisInferred_from_orthology
Sequence_nameCBG04068
Molecular_nameCBG04068
CBG04068.1
CBP01037
Other_nameCBG_04068Accession_evidenceNDBHE600906
Public_nameCbr-rnt-1
DB_infoDatabaseNDBlocus_tagCBG_04068
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-rnt-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrnt
AlleleWBVar00108980
RNASeq_FPKMWBls:00000022.67936From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.13425From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.68831From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
5.03507From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
3.70059From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
4.02583From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.19445From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000031.9188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
1.95113From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.98345From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
1.30075From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000410.5737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
13.449From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
16.3244From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
10.4188From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
12.5366From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
13.0282From_analysisRNASeq.briggsae.WBls:0000004.control_mean
15.2876From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.271208From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.963956From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.84729From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.3067From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.13533From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.36823From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.93106From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000355.22235From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.96958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.37921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
3.4719From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.5646From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.96663From_analysisRNASeq.briggsae.WBls:0000038.control_mean
6.95314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000411.10241From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.35958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.48639From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.6132From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
2.42422From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.6217From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.61745From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.66615From_analysisRNASeq.briggsae.WBls:0000041.control_mean
5.8301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
6.46988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.880287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.07789From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.14649From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.20262From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.4803From_analysisRNASeq.briggsae.WBls:0000063.control_mean
3.09424From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
1.17455From_analysisRNASeq.briggsae.WBls:0000063.control_median
1.51919From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.71362From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001013.09424From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.08927From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.6326From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.82834From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00125178
00125179
00125180
00125181
00125182
Ortholog (29)
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity; DNA binding activity; and DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans rnt-1. In C. elegans, rnt-1 is involved in several processes, including nematode male tail tip morphogenesis; regulation of gene expression; and response to stress.Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCBG04068
Corresponding_CDS_historyCBG04068:bp194
CBG04068:bp255
Corresponding_transcriptCBG04068.1
Other_sequenceJI178629.1
JI179996.1
Dviv_isotig33381
Experimental_infoExpr_patternExpr1057705
Microarray_resultsGPL8303_CB6_WBGene00026814_A
GPL8303_CB6_WBGene00026814_B
GPL14143_CBG04068_444-503_0.920_10_C
GPL14143_CBG04068_631-690_0.929_6_A
GPL14143_CBG04068_772-831_0.794_61_B
Expression_clusterWBPaper00051137:Santeuil-virus_upregulated_JU1264
MethodGene