WormBase Tree Display for Gene: WBGene00026765

WBGene00026765 SMap: S_parent: Sequence: cb25.fpc0071c2
  Identity: Version: 2
    Name: CGC_name: Cbr-vpr-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG04017
      Molecular_name: CBG04017
        CBG04017.1
        CBP06625
      Other_name: CBG_04017 Accession_evidence: NDB HE600906
      Public_name: Cbr-vpr-1
    DB_info: Database: NDB locus_tag CBG_04017
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:56 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 15 Nov 2007 11:37:43 WBPerson2970 Name_change: CGC_name: Cbr-vpr-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vpr
    Allele: WBVar00108925
      WBVar00108924
    RNASeq_FPKM: WBls:0000002 113.728 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        168.46 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        84.7299 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        87.9941 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        117.355 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        121.975 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        146.717 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 162.552 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        167.32 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        172.088 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        160.408 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        165.016 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 197.84 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        204.268 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        210.695 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        196.263 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        202.987 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        204.65 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        205.486 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 16.0367 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        38.7423 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        4.16021 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        96.0299 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        37.9756 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        44.0353 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        59.9144 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 67.7679 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 137.845 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        32.2419 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        68.7262 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        69.4498 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        70.1734 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        77.2466 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 134.618 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        145.249 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        145.912 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        146.575 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        147.792 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        98.8562 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        117.217 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        133.098 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        142.902 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        144.076 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 101.129 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        103.426 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        104.769 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        114.343 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        166.797 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        95.5922 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        102.277 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        109.473 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        85.1238 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 106.41 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        98.8562 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        104.098 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        115.91 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00125114
    Ortholog (25)
    Paralog: WBGene00024014 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027012 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029898 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00031049 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039365 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in endoplasmic reticulum membrane. Is an ortholog of C. elegans vpr-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: CBG04017
    Corresponding_CDS_history: CBG04017:bp194
      CBG04017:bp255
    Corresponding_transcript: CBG04017.1
    Other_sequence (23)
  Experimental_info: Expr_pattern: Expr1065138
    Microarray_results: GPL8303_CB6_WBGene00026765_A
      GPL8303_CB6_WBGene00026765_B
      GPL14143_CBG04017_200-259_0.933_3_C
      GPL14143_CBG04017_558-617_0.948_2_A
      GPL14143_CBG04017_647-706_0.970_1_B
  Method: Gene