WormBase Tree Display for Gene: WBGene00026621

WBGene00026621 SMap: S_parent: Sequence: cb25.fpc0071c2
  Identity: Version: 2
    Name: CGC_name: Cbr-nhr-49 From_analysis: Inferred_from_orthology
      Sequence_name: CBG03844
      Molecular_name: CBG03844
        CBG03844.1
        CBP35915
      Other_name: CBG_03844 Accession_evidence: NDB HE600906
      Public_name: Cbr-nhr-49
    DB_info: Database: NDB locus_tag CBG_03844
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:56 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-nhr-49
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    Allele: WBVar00108782
      WBVar00108783
      WBVar00108784
      WBVar00108785
      WBVar00108786
    RNASeq_FPKM: WBls:0000002 110.767 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        51.9175 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        56.5252 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        73.0699 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        55.6254 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        56.0753 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        68.7088 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 69.9036 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        74.1836 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        78.4637 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        70.6697 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        73.0123 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 80.6867 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        85.6982 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        90.7097 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        84.1391 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        87.089 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        88.3929 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        99.3401 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 16.7386 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        34.7462 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        4.76087 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        82.739 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        100.6 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        49.7388 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        51.2096 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 88.6008 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 12.7255 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        132.208 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        42.5282 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        52.6147 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        62.5407 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        62.7013 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 40.2984 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        43.8665 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        44.3639 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        44.4003 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        44.4368 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        46.3669 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        45.4019 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        48.5211 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        54.6845 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        60.976 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 31.4849 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        32.4764 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        34.3339 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        36.1793 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        37.6116 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        53.5834 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        35.2566 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        38.2481 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        41.431 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 53.5834 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        62.3214 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        58.7506 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        64.7862 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00124903
      00124904
      00124905
      00124906
    Ortholog (30)
    Paralog (30)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-49. In C. elegans, nhr-49 is involved in determination of adult lifespan; positive regulation of transcription by RNA polymerase II; and regulation of fatty acid metabolic process. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: CBG03844
    Corresponding_CDS_history: CBG03844:bp194
    Corresponding_transcript: CBG03844.1
    Other_sequence (66)
  Experimental_info: Expr_pattern: Expr1054284
    Microarray_results: GPL8303_CB6_WBGene00026621_A
      GPL8303_CB6_WBGene00026621_B
      GPL14143_CBG03844_795-854_0.909_13_B
      GPL14143_CBG03844_850-909_0.918_9_C
      GPL14143_CBG03844_939-998_0.938_2_A
  Method: Gene