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WormBase Tree Display for Gene: WBGene00026608

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Name Class

WBGene00026608SMapS_parentSequencecb25.fpc0071c2
IdentityVersion2
NameCGC_nameCbr-sqv-5From_analysisInferred_from_orthology
Sequence_nameCBG03828
Molecular_nameCBG03828a
CBG03828a.1
CBP39088
CBG03828b
CBP41080
CBG03828b.1
Other_nameCBG_03828Accession_evidenceNDBHE600906
Public_nameCbr-sqv-5
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-sqv-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsqv
AlleleWBVar00017714
WBVar00017719
WBVar00017709
RNASeq_FPKMWBls:000000249.3311From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
56.6108From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
57.1712From_analysisRNASeq.briggsae.WBls:0000002.control_mean
65.5717From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
61.0913From_analysisRNASeq.briggsae.WBls:0000002.control_median
64.9085From_analysisRNASeq.briggsae.WBls:0000002.control_mean
88.1204From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003105.094From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
88.899From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
96.9965From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
103.659From_analysisRNASeq.briggsae.WBls:0000003.control_mean
116.983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000462.9552From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
66.1922From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
69.4292From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
61.467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
65.6536From_analysisRNASeq.briggsae.WBls:0000004.control_mean
66.9484From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
67.468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002711.2526From_analysisRNASeq.briggsae.WBls:0000027.control_mean
25.1339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.78475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
5.83916From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
15.4865From_analysisRNASeq.briggsae.WBls:0000027.control_median
16.7243From_analysisRNASeq.briggsae.WBls:0000027.control_mean
33.1393From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003519.7146From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003822.8187From_analysisRNASeq.briggsae.WBls:0000038.control_mean
24.3147From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
24.9284From_analysisRNASeq.briggsae.WBls:0000038.control_median
25.542From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
34.976From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.44207From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041110.511From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
113.537From_analysisRNASeq.briggsae.WBls:0000041.control_median
116.564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
131.578From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
30.5627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
97.3039From_analysisRNASeq.briggsae.WBls:0000041.control_mean
32.2236From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
38.4878From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
74.4994From_analysisRNASeq.briggsae.WBls:0000041.control_median
76.6545From_analysisRNASeq.briggsae.WBls:0000041.control_mean
WBls:000006341.5145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
49.4002From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
49.5291From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
49.6183From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
52.3063From_analysisRNASeq.briggsae.WBls:0000063.control_mean
71.4696From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
49.5737From_analysisRNASeq.briggsae.WBls:0000063.control_median
53.1352From_analysisRNASeq.briggsae.WBls:0000063.control_mean
57.2794From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010141.5145From_analysisRNASeq.briggsae.total_over_all_stages.control_median
48.1033From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
49.3657From_analysisRNASeq.briggsae.total_over_all_stages.control_median
51.503From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00124895
00124896
Ortholog (34)
ParalogWBGene00029105Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable acetylgalactosaminyltransferase activity. Predicted to be located in Golgi cisterna membrane. Is an ortholog of C. elegans sqv-5. In C. elegans, sqv-5 is involved in several processes, including egg-laying behavior; positive regulation of vulval development; and vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSCBG03828a
CBG03828b
Corresponding_CDS_historyCBG03828:bp194
CBG03828:bp255
Corresponding_transcriptCBG03828a.1
CBG03828b.1
Other_sequence (28)
Experimental_infoExpr_patternExpr1067607
Microarray_resultsGPL8303_CB6_WBGene00026608_A
GPL8303_CB6_WBGene00026608_B
GPL8303_CB6_WBGene00026608_C
GPL14143_CBG03828_1933-1992_0.934_5_C
GPL14143_CBG03828_2069-2128_0.933_6_A
GPL14143_CBG03828_2175-2234_0.957_1_B
MethodGene