WormBase Tree Display for Gene: WBGene00022103
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WBGene00022103 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | cdh-12 | Person_evidence | WBPerson698 | |||||
Sequence_name | Y71D11A.1 | ||||||||
Molecular_name | Y71D11A.1a | ||||||||
Y71D11A.1a.1 | |||||||||
CE53242 | |||||||||
Y71D11A.1b | |||||||||
CE53391 | |||||||||
Y71D11A.1b.1 | |||||||||
Other_name | Y92C3A.b | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y92C3A.c | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y92C3A.e | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y71D11A.1 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | cdh-12 | ||||||||
DB_info | Database | AceView | gene | 3C269 | |||||
WormQTL | gene | WBGene00022103 | |||||||
WormFlux | gene | WBGene00022103 | |||||||
NDB | locus_tag | CELE_Y71D11A.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00022103|UniProtKB=K8F801 | |||||||
family | PTHR24026 | ||||||||
NCBI | gene | 190583 | |||||||
RefSeq | protein | NM_001373846.2 | |||||||
NM_001373847.2 | |||||||||
TrEMBL | UniProtAcc | A0A4V0IJU8 | |||||||
A0A4V6M3X3 | |||||||||
UniProt_GCRP | UniProtAcc | A0A4V6M3X3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 19 Oct 2005 17:56:47 | WBPerson1867 | Event | Acquires_merge | WBGene00000404 | ||||
3 | 20 Oct 2005 09:09:01 | WBPerson1867 | Event | Acquires_merge | WBGene00022355 | ||||
Acquires_merge | WBGene00000404 | ||||||||
WBGene00022355 | |||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cdh | ||||||||
Allele (818) | |||||||||
Strain | WBStrain00032839 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00003539 | ||||||||
00003540 | |||||||||
00003541 | |||||||||
00121029 | |||||||||
00121030 | |||||||||
00121031 | |||||||||
00121032 | |||||||||
Ortholog (22) | |||||||||
Paralog | WBGene00001475 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00001980 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00017576 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00000395 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00000396 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00000397 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00000399 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00000401 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00000402 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00019994 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | cdh-12 encodes a cadherin; by sequence similarity, CDH-12 is predicted to function in cellular adhesion. | Paper_evidence | WBPaper00004508 | |||||
WBPaper00005654 | |||||||||
WBPaper00024497 | |||||||||
WBPaper00025054 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 26 Apr 2012 00:00:00 | ||||||||
Automated_description | Predicted to enable calcium ion binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y71D11A.1a | |||||||
Y71D11A.1b | |||||||||
Corresponding_CDS_history | Y71D11A.1:wp138 | ||||||||
Y71D11A.1:wp216 | |||||||||
Y71D11A.1:wp234 | |||||||||
Y71D11A.1:wp271 | |||||||||
Corresponding_transcript | Y71D11A.1a.1 | ||||||||
Y71D11A.1b.1 | |||||||||
Other_sequence (139) | |||||||||
Associated_feature | WBsf658601 | ||||||||
WBsf991237 | |||||||||
WBsf991238 | |||||||||
WBsf991239 | |||||||||
WBsf991240 | |||||||||
WBsf991241 | |||||||||
WBsf991242 | |||||||||
WBsf1014186 | |||||||||
Experimental_info | RNAi_result | WBRNAi00020001 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00058621 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00058139 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037914 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019994 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00065252 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00058620 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019992 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1012002 | ||||||||
Expr1039722 | |||||||||
Expr1161564 | |||||||||
Expr2009799 | |||||||||
Expr2028039 | |||||||||
Microarray_results (40) | |||||||||
Expression_cluster (250) | |||||||||
Interaction (12) | |||||||||
Map_info | Map | III | Position | -22.6639 | Error | 0.009974 | |||
Positive | Positive_clone | Y71D11A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |