WormBase Tree Display for Gene: WBGene00021948
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WBGene00021948 | SMap | S_parent | Sequence | Y55F3C | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | kvs-5 | Person_evidence | WBPerson260 | |||||
WBPerson145 | |||||||||
Sequence_name | Y55F3C.3 | ||||||||
Molecular_name (18) | |||||||||
Other_name | Y55F3C.f | Curator_confirmed | WBPerson1983 | ||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
Y55F3C.e | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y55F3C.3 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | kvs-5 | ||||||||
DB_info | Database | AceView | gene | 4B505 | |||||
WormQTL | gene | WBGene00021948 | |||||||
WormFlux | gene | WBGene00021948 | |||||||
NDB | locus_tag | CELE_Y55F3C.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021948|UniProtKB=U4PLR3 | |||||||
family | PTHR11537 | ||||||||
NCBI | gene | 176899 | |||||||
RefSeq | protein | NM_067577.8 | |||||||
NM_001307395.4 | |||||||||
NM_001307396.4 | |||||||||
NM_001307394.3 | |||||||||
NM_001307393.3 | |||||||||
NM_001307392.3 | |||||||||
TrEMBL | UniProtAcc | U4PE60 | |||||||
U4PR20 | |||||||||
U4PBB7 | |||||||||
U4PAX5 | |||||||||
Q95XV8 | |||||||||
U4PLR3 | |||||||||
UniProt_GCRP | UniProtAcc | U4PLR3 | |||||||
OMIM | gene | 600397 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 29 Jul 2011 16:30:08 | WBPerson2970 | Name_change | CGC_name | kvs-5 | ||||
3 | 04 Sep 2013 14:28:38 | WBPerson4025 | Event | Acquires_merge | WBGene00043706 | ||||
Acquires_merge | WBGene00043706 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | kvs | ||||||||
Allele (372) | |||||||||
Strain | WBStrain00007651 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (19) | |||||||||
Ortholog (51) | |||||||||
Paralog (13) | |||||||||
Structured_description | Automated_description | Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Located in plasma membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 26. Is an ortholog of human KCNF1 (potassium voltage-gated channel modifier subfamily F member 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0080461 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6231) | ||||
DOID:1826 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6231) | ||||||
Molecular_info | Corresponding_CDS | Y55F3C.3a | |||||||
Y55F3C.3c | |||||||||
Y55F3C.3d | |||||||||
Y55F3C.3e | |||||||||
Y55F3C.3f | |||||||||
Y55F3C.3g | |||||||||
Corresponding_CDS_history | Y55F3C.3:wp175 | ||||||||
Y55F3C.3b:wp274 | |||||||||
Corresponding_transcript | Y55F3C.3a.1 | ||||||||
Y55F3C.3c.1 | |||||||||
Y55F3C.3d.1 | |||||||||
Y55F3C.3e.1 | |||||||||
Y55F3C.3f.1 | |||||||||
Y55F3C.3g.1 | |||||||||
Other_sequence (19) | |||||||||
Associated_feature (27) | |||||||||
Experimental_info | RNAi_result | WBRNAi00021056 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00002374 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00057555 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021057 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9462 | ||||||||
Expr1016026 | |||||||||
Expr1017500 | |||||||||
Expr1039655 | |||||||||
Expr1160988 | |||||||||
Expr1160989 | |||||||||
Expr2012988 | |||||||||
Expr2031220 | |||||||||
Drives_construct | WBCnstr00024396 | ||||||||
Construct_product | WBCnstr00014027 | ||||||||
WBCnstr00024396 | |||||||||
Microarray_results (44) | |||||||||
Expression_cluster (196) | |||||||||
Interaction | WBInteraction000112836 | ||||||||
WBInteraction000112839 | |||||||||
WBInteraction000112840 | |||||||||
WBInteraction000162561 | |||||||||
WBInteraction000167519 | |||||||||
WBInteraction000170122 | |||||||||
WBInteraction000293558 | |||||||||
WBInteraction000469834 | |||||||||
WBInteraction000472696 | |||||||||
Map_info | Map | IV | Position | -23.571 | Error | 0.008513 | |||
Positive | Positive_clone | Y55F3C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038444 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064898 | |||||||||
WBPaper00065331 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |