WormBase Tree Display for Gene: WBGene00021921
expand all nodes | collapse all nodes | view schema
| WBGene00021921 | SMap | S_parent | Sequence | Y55F3AM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rbm-39 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y55F3AM.3 | ||||||||
| Molecular_name | Y55F3AM.3a | ||||||||
| Y55F3AM.3a.1 | |||||||||
| CE29126 | |||||||||
| Y55F3AM.3c | |||||||||
| CE31656 | |||||||||
| Y55F3AM.3b | |||||||||
| Y55F3AM.3c.1 | |||||||||
| Y55F3AM.3c.2 | |||||||||
| Y55F3AM.3c.3 | |||||||||
| Y55F3AM.3c.4 | |||||||||
| Other_name | CELE_Y55F3AM.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rbm-39 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Dec 2017 13:24:47 | WBPerson1983 | Name_change | CGC_name | rbm-39 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rbm | ||||||||
| Allele (184) | |||||||||
| Possibly_affected_by | WBVar02158827 | ||||||||
| Strain | WBStrain00002374 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00087777 | ||||||||
| 00087778 | |||||||||
| 00087779 | |||||||||
| 00087780 | |||||||||
| 00130012 | |||||||||
| 00130013 | |||||||||
| 00130014 | |||||||||
| 00130015 | |||||||||
| Ortholog (40) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Automated_description | Predicted to enable chromatin DNA binding activity. Predicted to be involved in nuclear envelope organization. Predicted to be located in nucleus. Expressed in PVDL; PVDR; neurons; and tail. Is an ortholog of human RBM39 (RNA binding motif protein 39). | Paper_evidence | WBPaper00065943 | |||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y55F3AM.3a | |||||||
| Y55F3AM.3c | |||||||||
| Corresponding_CDS_history | Y55F3AM.3b:wp252 | ||||||||
| Corresponding_transcript | Y55F3AM.3b | ||||||||
| Y55F3AM.3a.1 | |||||||||
| Y55F3AM.3c.1 | |||||||||
| Y55F3AM.3c.2 | |||||||||
| Y55F3AM.3c.3 | |||||||||
| Y55F3AM.3c.4 | |||||||||
| Other_sequence (86) | |||||||||
| Associated_feature | WBsf645778 | ||||||||
| WBsf981666 | |||||||||
| WBsf995317 | |||||||||
| WBsf995318 | |||||||||
| WBsf995319 | |||||||||
| WBsf227906 | |||||||||
| WBsf227907 | |||||||||
| WBsf227908 | |||||||||
| Experimental_info | RNAi_result (63) | ||||||||
| Expr_pattern | Chronogram42 | ||||||||
| Expr7064 | |||||||||
| Expr12224 | |||||||||
| Expr12231 | |||||||||
| Expr1024642 | |||||||||
| Expr1039634 | |||||||||
| Expr1160963 | |||||||||
| Expr2007982 | |||||||||
| Expr2026224 | |||||||||
| Drives_construct | WBCnstr00003024 | ||||||||
| WBCnstr00020422 | |||||||||
| Construct_product | WBCnstr00020474 | ||||||||
| Microarray_results (41) | |||||||||
| Expression_cluster (158) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | IV | Position | -22.7055 | |||||
| Positive | Positive_clone | Y55F3AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00046432 | |||||||||
| WBPaper00046601 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063218 | |||||||||
| WBPaper00065314 | |||||||||
| WBPaper00066805 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
