WormBase Tree Display for Gene: WBGene00020951
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| WBGene00020951 | SMap | S_parent | Sequence | W02F12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sna-1 | Person_evidence | WBPerson71 | |||||
| Sequence_name | W02F12.6 | ||||||||
| Molecular_name | W02F12.6 | ||||||||
| W02F12.6.1 | |||||||||
| CE31084 | |||||||||
| Other_name | CELE_W02F12.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | sna-1 | ||||||||
| DB_info | Database | AceView | gene | 5H190 | |||||
| WormQTL | gene | WBGene00020951 | |||||||
| WormFlux | gene | WBGene00020951 | |||||||
| NDB | locus_tag | CELE_W02F12.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020951|UniProtKB=O45149 | |||||||
| family | PTHR13104 | ||||||||
| NCBI | gene | 179064 | |||||||
| RefSeq | protein | NM_072300.7 | |||||||
| TREEFAM | TREEFAM_ID | TF343425 | |||||||
| TrEMBL | UniProtAcc | O45149 | |||||||
| UniProt_GCRP | UniProtAcc | O45149 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Dec 2006 15:46:53 | WBPerson1847 | Name_change | CGC_name | sna-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sna | ||||||||
| Allele (25) | |||||||||
| Possibly_affected_by | WBVar02158598 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00035391 | ||||||||
| 00035392 | |||||||||
| 00035393 | |||||||||
| 00035394 | |||||||||
| 00035395 | |||||||||
| Contained_in_operon | CEOP5132 | ||||||||
| Ortholog (25) | |||||||||
| Paralog | WBGene00003164 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00020475 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | sna-1 encodes an snRNP-binding protein (SNA-1/SL21p) orthologous toAscaris SL30p (SL 30kd) and Brugia 13258.m00169, and paralogous toBrugia 14704.m00455; SNA-1 is found in the Sm snRNP SL1, but not in SL2;in snRNP SL1, SNA-1 associates with the SNA-2/SL75p protein, while beingreplaced by SUT-1/SL26p (a paralog of SNA-1) in snRNP Y; sna-1(RNAi)animals, like sut-1(bk79) mutants, have cold-sensitive sterility,whereas sna-1(RNAi) combined with sut-1(bk79) is synthetically lethal;double sna-1(RNAi) sut-1(RNAi) is lethal; these RNAi data indicate thatSNA-1 and SUT-1 are partially redundant, and suggest that snRNP Y (likesnRNP SL1) may participate in trans-splicing; SNA-1 can bind SNA-2 evenin the absence of RNA. | Paper_evidence | WBPaper00029092 | |||||
| WBPaper00029095 | |||||||||
| WBPaper00029096 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Feb 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of core mediator complex and mediator complex. Expressed in several structures, including germ cell and somatic cell. | Paper_evidence | WBPaper00065943 | ||||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W02F12.6 | |||||||
| Corresponding_transcript | W02F12.6.1 | ||||||||
| Other_sequence | CBC05314_1 | ||||||||
| CR00422 | |||||||||
| CRC05434_1 | |||||||||
| CRC11360_1 | |||||||||
| Associated_feature | WBsf652732 | ||||||||
| WBsf233857 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00062396 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054620 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019512 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103558 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065828 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036205 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065827 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr16316 | ||||||||
| Expr1023577 | |||||||||
| Expr1039129 | |||||||||
| Expr1158164 | |||||||||
| Expr2015934 | |||||||||
| Expr2034167 | |||||||||
| Drives_construct | WBCnstr00024761 | ||||||||
| Construct_product | WBCnstr00024761 | ||||||||
| Regulate_expr_cluster | WBPaper00064201:SNA-1_interacting | ||||||||
| Antibody | WBAntibody00001225 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (124) | |||||||||
| Interaction (70) | |||||||||
| Map_info | Map | V | Position | 0.134485 | Error | 8.3e-05 | |||
| Positive | Positive_clone | W02F12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029092 | ||||||||
| WBPaper00033621 | |||||||||
| WBPaper00051343 | |||||||||
| WBPaper00063447 | |||||||||
| WBPaper00064201 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
