WormBase Tree Display for Gene: WBGene00020425

WBGene00020425 SMap: S_parent: Sequence: T10H9
  Identity: Version: 2
    Name: CGC_name: syx-18 Person_evidence: WBPerson3132
      Sequence_name: T10H9.3
      Molecular_name: T10H9.3
        T10H9.3.1
        CE18251
      Other_name: CELE_T10H9.3 Accession_evidence: NDB BX284605
      Public_name: syx-18
    DB_info: Database: AceView gene 5H134
        WormQTL gene WBGene00020425
        WormFlux gene WBGene00020425
        NDB locus_tag CELE_T10H9.3
        Panther gene CAEEL|WormBase=WBGene00020425|UniProtKB=O76413
          family PTHR15959
        NCBI gene 179055
        RefSeq protein NM_072286.6
        TREEFAM TREEFAM_ID TF105868
        TrEMBL UniProtAcc O76413
        UniProt_GCRP UniProtAcc O76413
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 16 Apr 2010 14:03:06 WBPerson2970 Name_change: CGC_name: syx-18
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syx
    Allele (37)
    Strain: WBStrain00036317
    RNASeq_FPKM (74)
    GO_annotation: 00040165
      00040166
      00040167
      00040168
      00040169
      00040170
    Contained_in_operon: CEOP5128
    Ortholog (33)
    Structured_description: Automated_description: Predicted to be involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in endoplasmic reticulum. Predicted to be part of SNARE complex. Is an ortholog of human STX18 (syntaxin 18). Paper_evidence: WBPaper00065943
            WBPaper00067038
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS296 version of WormBase
          Date_last_updated: 20 Mar 2025 00:00:00
  Molecular_info: Corresponding_CDS: T10H9.3
    Corresponding_transcript: T10H9.3.1
    Other_sequence: Dviv_isotig25645
      Dviv_isotig25688
      Tcol_isotig19080
      CBC03239_1
      Acan_isotig15765
      Oden_isotig20365
      Tcir_isotig13719
    Associated_feature: WBsf669064
      WBsf233840
  Experimental_info: RNAi_result: WBRNAi00090923 Inferred_automatically: RNAi_primary
      WBRNAi00069910 Inferred_automatically: RNAi_primary
      WBRNAi00026271 Inferred_automatically: RNAi_primary
      WBRNAi00009155 Inferred_automatically: RNAi_primary
      WBRNAi00033517 Inferred_automatically: RNAi_primary
      WBRNAi00053088 Inferred_automatically: RNAi_primary
      WBRNAi00085869 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016816
      Expr1038908
      Expr1156694
      Expr2017191
      Expr2035327
    Drives_construct: WBCnstr00025150
    Construct_product: WBCnstr00025150
    Microarray_results (19)
    Expression_cluster (91)
    Interaction: WBInteraction000032126
      WBInteraction000149069
      WBInteraction000183171
      WBInteraction000266672
      WBInteraction000308479
      WBInteraction000370006
      WBInteraction000446638
      WBInteraction000512412
  Map_info: Map: V Position: 0.131532 Error: 0.000289
    Positive: Positive_clone: T10H9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00029049
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene