WormBase Tree Display for Gene: WBGene00020317
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WBGene00020317 | SMap | S_parent | Sequence | T07E3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | pdf-1 | Paper_evidence | WBPaper00031656 | |||||
Person_evidence | WBPerson3516 | ||||||||
WBPerson3480 | |||||||||
Sequence_name | T07E3.6 | ||||||||
Molecular_name | T07E3.6a | ||||||||
T07E3.6a.1 | |||||||||
CE52388 | |||||||||
T07E3.6b | |||||||||
CE52158 | |||||||||
T07E3.6a.2 | |||||||||
T07E3.6b.1 | |||||||||
Other_name | nlp-74 | ||||||||
CELE_T07E3.6 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | pdf-1 | ||||||||
DB_info | Database | AceView | gene | 3I0 | |||||
WormQTL | gene | WBGene00020317 | |||||||
WormFlux | gene | WBGene00020317 | |||||||
NDB | locus_tag | CELE_T07E3.6 | |||||||
NCBI | gene | 175963 | |||||||
RefSeq | protein | NM_001392134.1 | |||||||
NM_171878.7 | |||||||||
SwissProt | UniProtAcc | G8JYC6 | |||||||
TREEFAM | TREEFAM_ID | TF321008 | |||||||
UniProt_GCRP | UniProtAcc | G8JYC6 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 18 Apr 2008 13:26:44 | WBPerson2970 | Name_change | CGC_name | pdf-1 | ||||
3 | 13 Nov 2017 15:54:28 | WBPerson1983 | Name_change | Other_name | nlp-74 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | |||||||||
Allele (49) | |||||||||
Strain | WBStrain00026308 | ||||||||
WBStrain00026321 | |||||||||
WBStrain00031072 | |||||||||
WBStrain00055110 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (21) | |||||||||
Structured_description | Automated_description | Involved in several processes, including locomotory behavior; parturition; and positive regulation of protein secretion. Predicted to be located in extracellular region. Expressed in neurons and rectum. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T07E3.6a | |||||||
T07E3.6b | |||||||||
Corresponding_CDS_history | T07E3.6a:wp261 | ||||||||
T07E3.6b:wp261 | |||||||||
Corresponding_transcript | T07E3.6a.1 | ||||||||
T07E3.6a.2 | |||||||||
T07E3.6b.1 | |||||||||
Other_sequence (69) | |||||||||
Associated_feature | WBsf667023 | ||||||||
WBsf992896 | |||||||||
WBsf992897 | |||||||||
WBsf992898 | |||||||||
WBsf1015170 | |||||||||
Experimental_info | RNAi_result | WBRNAi00035310 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006788 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00052767 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9958 | ||||||||
Expr11002 | |||||||||
Expr12483 | |||||||||
Expr15402 | |||||||||
Expr1024802 | |||||||||
Expr1156375 | |||||||||
Expr1200318 | |||||||||
Expr2014800 | |||||||||
Expr2033034 | |||||||||
Drives_construct | WBCnstr00004986 | ||||||||
WBCnstr00014967 | |||||||||
WBCnstr00015835 | |||||||||
WBCnstr00017683 | |||||||||
WBCnstr00018027 | |||||||||
WBCnstr00018339 | |||||||||
WBCnstr00021689 | |||||||||
WBCnstr00025226 | |||||||||
Construct_product (11) | |||||||||
Regulate_expr_cluster | WBPaper00040193:pdf-1(tm1996)_downregulated | ||||||||
WBPaper00040193:pdf-1(tm1996)_upregulated | |||||||||
Microarray_results (26) | |||||||||
Expression_cluster (230) | |||||||||
Interaction (21) | |||||||||
Map_info | Map | III | Position | -0.901914 | Error | 0.002146 | |||
Positive | Positive_clone | T07E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (32) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |