WormBase Tree Display for Gene: WBGene00020265

WBGene00020265 SMap: S_parent: Sequence: T05H4
  Identity: Version: 2
    Name: CGC_name: fbxa-196 Person_evidence: WBPerson655
      Sequence_name: T05H4.2
      Molecular_name: T05H4.2
        T05H4.2.1
        CE13271
      Other_name: CELE_T05H4.2 Accession_evidence: NDB BX284605
      Public_name: fbxa-196
    DB_info: Database: AceView gene 5G929
        WormQTL gene WBGene00020265
        WormFlux gene WBGene00020265
        NDB locus_tag CELE_T05H4.2
        Panther gene CAEEL|WormBase=WBGene00020265|UniProtKB=O16525
          family PTHR23015
        NCBI gene 188148
        RefSeq protein NM_072241.4
        TREEFAM TREEFAM_ID TF322479
        TrEMBL UniProtAcc O16525
        UniProt_GCRP UniProtAcc O16525
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 01 Mar 2007 11:55:19 WBPerson2970 Name_change: CGC_name: fbxa-196
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (25)
    RNASeq_FPKM (74)
    GO_annotation: 00026758
      00026759
      00026760
    Ortholog (12)
    Paralog (220)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in OLQDL; OLQVL; neurons; and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including mut-16; nuo-6; and atfs-1 based on microarray; RNA-seq; and tiling array studies. Is affected by sixteen chemicals including methylmercuric chloride; Tunicamycin; and manganese chloride based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: FTH domain; Mos1 transposase, HTH domain; HTH domain in Mos1 transposase; F-box domain; F-box A protein FB224; and Domain of unknown function DUF38/FTH, Caenorhabditis species. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS292 version of WormBase
          Date_last_updated: 24 Apr 2024 00:00:00
  Molecular_info: Corresponding_CDS: T05H4.2
    Corresponding_transcript: T05H4.2.1
    Associated_feature: WBsf661337
      WBsf1000261
      WBsf1019803
  Experimental_info: RNAi_result: WBRNAi00035241 Inferred_automatically: RNAi_primary
      WBRNAi00018261 Inferred_automatically: RNAi_primary
      WBRNAi00052589 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1156203
      Expr2011510
      Expr2029747
    Drives_construct: WBCnstr00025254
    Construct_product: WBCnstr00025254
    Microarray_results (14)
    Expression_cluster (112)
    Interaction (15)
  Map_info: Map: V Position: -0.160706 Error: 0.003045
    Positive: Positive_clone: T05H4 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene