WormBase Tree Display for Gene: WBGene00019952
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WBGene00019952 | SMap | S_parent | Sequence | R08C7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | 4F202 | |||||
WormQTL | gene | WBGene00019952 | |||||||
WormFlux | gene | WBGene00019952 | |||||||
NDB | locus_tag | CELE_R08C7.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00019952|UniProtKB=Q21842 | |||||||
family | PTHR22899 | ||||||||
NCBI | gene | 177210 | |||||||
RefSeq | protein | NM_068164.7 | |||||||
TrEMBL | UniProtAcc | Q21842 | |||||||
UniProt_GCRP | UniProtAcc | Q21842 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 17:22:20 | WBPerson2970 | Name_change | CGC_name | fbxb-74 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxb | ||||||||
Allele (26) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (36) | |||||||||
Paralog (143) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including MSpppaaa; PDE socket cell; anterior ganglion (post); head mesodermal cell; and neurons based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including cyc-1; rsks-1; and hsb-1 based on microarray; proteomic; and RNA-seq studies. Is affected by fifteen chemicals including methylmercuric chloride; rotenone; and indole based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box associated; F-box associated domain, type 2; and F-box domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R08C7.9 | |||||||
Corresponding_CDS_history | R08C7.9:wp97 | ||||||||
R08C7.9:wp239 | |||||||||
Corresponding_transcript | R08C7.9.1 | ||||||||
Associated_feature | WBsf651730 | ||||||||
WBsf667878 | |||||||||
WBsf996266 | |||||||||
WBsf996267 | |||||||||
WBsf1017236 | |||||||||
WBsf229961 | |||||||||
Experimental_info | RNAi_result | WBRNAi00017584 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1038663 | ||||||||
Expr1155218 | |||||||||
Expr2011675 | |||||||||
Expr2029914 | |||||||||
Microarray_results (14) | |||||||||
Expression_cluster (108) | |||||||||
Interaction (217) | |||||||||
Map_info | Map | IV | Position | 0.254271 | Error | 0.005039 | |||
Positive | Positive_clone | R08C7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |