WormBase Tree Display for Gene: WBGene00019888
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WBGene00019888 | SMap | S_parent | Sequence | R05F9 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||||
Name | CGC_name | btbd-10 | Paper_evidence | WBPaper00040837 | |||||
Sequence_name | R05F9.1 | ||||||||
Molecular_name (15) | |||||||||
Other_name | CELE_R05F9.1 | Accession_evidence | NDB | BX284602 | |||||
Public_name | btbd-10 | ||||||||
DB_info | Database | AceView | gene | 2F201 | |||||
WormQTL | gene | WBGene00019888 | |||||||
WormFlux | gene | WBGene00019888 | |||||||
NDB | locus_tag | CELE_R05F9.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00019888|UniProtKB=Q21747 | |||||||
family | PTHR21637 | ||||||||
NCBI | gene | 173847 | |||||||
RefSeq | protein | NM_001393055.1 | |||||||
NM_170983.7 | |||||||||
NM_170984.4 | |||||||||
NM_001381405.1 | |||||||||
TREEFAM | TREEFAM_ID | TF314369 | |||||||
TrEMBL | UniProtAcc | Q21748 | |||||||
Q86NF2 | |||||||||
Q21747 | |||||||||
Q7JP41 | |||||||||
UniProt_GCRP | UniProtAcc | Q21747 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 04 Jul 2013 14:01:25 | WBPerson2970 | Name_change | CGC_name | snpc-1.4 | ||||
3 | 03 Mar 2014 15:36:02 | WBPerson2970 | Name_change | CGC_name | btbd-10 | ||||
Other_name | snpc-1.4 | ||||||||
4 | 21 Feb 2024 10:16:47 | WBPerson51134 | Event | ||||||
Name_change | Other_name | removed | |||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | btbd | ||||||||
Allele (95) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00069020 | ||||||||
00069021 | |||||||||
00069022 | |||||||||
00069023 | |||||||||
Ortholog (40) | |||||||||
Structured_description | Automated_description | Predicted to be involved in positive regulation of phosphorylation. Predicted to be located in cytoplasm. Expressed in hypodermal cell; intestine; pharyngeal neurons; and pharyngeal-intestinal valve. Is an ortholog of human BTBD10 (BTB domain containing 10) and KCTD20 (potassium channel tetramerization domain containing 20). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R05F9.1a | |||||||
R05F9.1b | |||||||||
R05F9.1c | |||||||||
R05F9.1d | |||||||||
Corresponding_CDS_history | R05F9.1d:wp274 | ||||||||
Corresponding_transcript | R05F9.1a.1 | ||||||||
R05F9.1b.1 | |||||||||
R05F9.1c.1 | |||||||||
R05F9.1c.2 | |||||||||
R05F9.1c.3 | |||||||||
R05F9.1c.4 | |||||||||
R05F9.1d.1 | |||||||||
Other_sequence (37) | |||||||||
Associated_feature (17) | |||||||||
Experimental_info | RNAi_result | WBRNAi00061563 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00051313 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061686 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017456 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00009034 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034616 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113564 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1399 | ||||||||
Expr142 | |||||||||
Expr6461 | |||||||||
Expr1016089 | |||||||||
Expr1038628 | |||||||||
Expr1155002 | |||||||||
Expr2009678 | |||||||||
Expr2027917 | |||||||||
Drives_construct | WBCnstr00004415 | ||||||||
WBCnstr00025519 | |||||||||
Construct_product | WBCnstr00025519 | ||||||||
Microarray_results (52) | |||||||||
Expression_cluster (112) | |||||||||
Interaction (62) | |||||||||
Map_info | Map | II | Position | -2.92376 | |||||
Positive | Positive_clone | R05F9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00040837 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064898 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |