WormBase Tree Display for Gene: WBGene00019417
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| WBGene00019417 | SMap | S_parent | Sequence | K05F6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | fbxb-52 | Person_evidence | WBPerson655 | |||||
| Sequence_name | K05F6.6 | ||||||||
| Molecular_name | K05F6.6 | ||||||||
| K05F6.6.1 | |||||||||
| CE51401 | |||||||||
| Other_name | CELE_K05F6.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | fbxb-52 | ||||||||
| DB_info | Database | AceView | gene | 2B838 | |||||
| WormQTL | gene | WBGene00019417 | |||||||
| WormFlux | gene | WBGene00019417 | |||||||
| NDB | locus_tag | CELE_K05F6.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019417|UniProtKB=O44863 | |||||||
| family | PTHR22899 | ||||||||
| NCBI | gene | 187036 | |||||||
| RefSeq | protein | NM_001322709.4 | |||||||
| TREEFAM | TREEFAM_ID | TF319367 | |||||||
| TrEMBL | UniProtAcc | O44863 | |||||||
| UniProt_GCRP | UniProtAcc | O44863 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Dec 2005 17:22:20 | WBPerson2970 | Name_change | CGC_name | fbxb-52 | ||||
| 3 | 18 Feb 2016 15:20:11 | WBPerson1983 | Event | Split_into | WBGene00269420 | ||||
| Split_into | WBGene00269420 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxb | ||||||||
| Allele (114) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (27) | |||||||||
| Paralog (143) | |||||||||
| Structured_description | Automated_description | Enriched in Caapa and amphid neurons based on single-cell RNA-seq studies. Is affected by several genes including swsn-1; rsr-2; and ash-2 based on tiling array; RNA-seq; and microarray studies. Is affected by ten chemicals including tryptophan; Psoralens; and allantoin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box associated; F-box associated domain, type 2; and F-box domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K05F6.6 | |||||||
| Corresponding_CDS_history | K05F6.6:wp252 | ||||||||
| Corresponding_transcript | K05F6.6.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00016641 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050005 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023201 | ||||||||
| Expr1038388 | |||||||||
| Expr1153700 | |||||||||
| Expr2011653 | |||||||||
| Expr2029892 | |||||||||
| Microarray_results | SMD_K05F6.6 | ||||||||
| Aff_K05F6.6 | |||||||||
| GPL19516_CGZ0027952 | |||||||||
| GPL21109_K05F6.6 | |||||||||
| GPL8673_K05F6_6P00197 | |||||||||
| GPL8673_K05F6_6P00510 | |||||||||
| Expression_cluster (72) | |||||||||
| Interaction (87) | |||||||||
| Map_info | Map | II | Position | -15.3902 | |||||
| Positive | Positive_clone | K05F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | |||||||||
| Method | Gene |
