WormBase Tree Display for Gene: WBGene00018236
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WBGene00018236 | SMap | S_parent | Sequence | F40F4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxb-71 | Person_evidence | WBPerson655 | |||||
Sequence_name | F40F4.1 | ||||||||
Molecular_name | F40F4.1 | ||||||||
F40F4.1.1 | |||||||||
CE51237 | |||||||||
Other_name | CELE_F40F4.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | fbxb-71 | ||||||||
DB_info | Database | AceView | gene | XD883 | |||||
WormQTL | gene | WBGene00018236 | |||||||
WormFlux | gene | WBGene00018236 | |||||||
NDB | locus_tag | CELE_F40F4.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00018236|UniProtKB=Q20225 | |||||||
family | PTHR22899 | ||||||||
NCBI | gene | 180618 | |||||||
RefSeq | protein | NM_001322617.3 | |||||||
TrEMBL | UniProtAcc | Q20225 | |||||||
UniProt_GCRP | UniProtAcc | Q20225 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 12 Dec 2005 17:22:20 | WBPerson2970 | Name_change | CGC_name | fbxb-71 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxb | ||||||||
Allele (20) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (30) | |||||||||
Paralog (143) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABarpapaaa; ABplaaaaaa; ABplpaaaaa; ABplpaaapa; and amphid neurons based on single-cell RNA-seq studies. Is affected by several genes including cyc-1; etr-1; and rsr-2 based on microarray; tiling array; and RNA-seq studies. Is affected by fourteen chemicals including Mercuric Chloride; multi-walled carbon nanotube; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box associated; F-box associated domain, type 2; and F-box domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F40F4.1 | |||||||
Corresponding_CDS_history | F40F4.1:wp252 | ||||||||
Corresponding_transcript | F40F4.1.1 | ||||||||
Associated_feature | WBsf647928 | ||||||||
WBsf647929 | |||||||||
WBsf647930 | |||||||||
WBsf662296 | |||||||||
WBsf1004571 | |||||||||
WBsf235465 | |||||||||
Experimental_info | RNAi_result | WBRNAi00014655 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00032030 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00046863 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1037852 | ||||||||
Expr1150730 | |||||||||
Expr2011673 | |||||||||
Expr2029912 | |||||||||
Drives_construct | WBCnstr00026676 | ||||||||
Construct_product | WBCnstr00026676 | ||||||||
Microarray_results (15) | |||||||||
Expression_cluster (126) | |||||||||
Interaction (170) | |||||||||
Map_info | Map | X | Position | -10.6338 | |||||
Positive | Positive_clone | F40F4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |