WormBase Tree Display for Gene: WBGene00017386
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WBGene00017386 | SMap | S_parent | Sequence | F11G11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nspd-5 | Person_evidence | WBPerson1983 | |||||
Sequence_name | F11G11.8 | ||||||||
Molecular_name | F11G11.8 | ||||||||
F11G11.8.1 | |||||||||
CE02882 | |||||||||
Other_name | CELE_F11G11.8 | Accession_evidence | NDB | BX284602 | |||||
Public_name | nspd-5 | ||||||||
DB_info | Database | AceView | gene | 2F150 | |||||
WormQTL | gene | WBGene00017386 | |||||||
WormFlux | gene | WBGene00017386 | |||||||
NDB | locus_tag | CELE_F11G11.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00017386|UniProtKB=G5EES8 | |||||||
family | PTHR35375 | ||||||||
NCBI | gene | 173837 | |||||||
RefSeq | protein | NM_062474.6 | |||||||
TREEFAM | TREEFAM_ID | TF319437 | |||||||
TrEMBL | UniProtAcc | G5EES8 | |||||||
UniProt_GCRP | UniProtAcc | G5EES8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 03 Oct 2006 09:54:23 | WBPerson2970 | Name_change | CGC_name | nspd-5 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nspd | ||||||||
Allele | WBVar01499702 | ||||||||
WBVar02151062 | |||||||||
WBVar01498435 | |||||||||
WBVar02074659 | |||||||||
WBVar00364960 | |||||||||
WBVar00364961 | |||||||||
WBVar01499506 | |||||||||
WBVar00728533 | |||||||||
WBVar01499507 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (98) | |||||||||
Paralog | WBGene00010633 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00012781 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00016058 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00017808 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00021280 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00022754 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00020860 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00020715 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00043147 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
Structured_description | Automated_description | Enriched in several structures, including AVK; amphid sheath cell; germ line; intestine; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including mut-16; nuo-6; and atx-3 based on microarray; RNA-seq; and proteomic studies. Is affected by twenty-eight chemicals including Ethanol; methylmercury hydroxide; and methylmercuric chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F11G11.8 | |||||||
Corresponding_transcript | F11G11.8.1 | ||||||||
Other_sequence | CJC05614_1 | ||||||||
CJC00637_3 | |||||||||
CR02183 | |||||||||
CJC00637_1 | |||||||||
FG621263.1 | |||||||||
CJC00550_2 | |||||||||
CJC04830_1 | |||||||||
CRC01200_2 | |||||||||
CJC00760_2 | |||||||||
Associated_feature | WBsf222962 | ||||||||
Experimental_info | RNAi_result | WBRNAi00019060 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007482 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00053901 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030843 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00044415 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00013149 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022595 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1021422 | ||||||||
Expr1148363 | |||||||||
Expr2014482 | |||||||||
Expr2032721 | |||||||||
Drives_construct | WBCnstr00027335 | ||||||||
Construct_product | WBCnstr00027335 | ||||||||
Microarray_results | SMD_F11G11.8 | ||||||||
172546_x_at | |||||||||
Aff_F11G11.8 | |||||||||
GPL8304_CE_WBGene00017386_A | |||||||||
GPL8673_F11G11_8P00002 | |||||||||
GPL8673_F11G11_8P00069 | |||||||||
Expression_cluster (209) | |||||||||
Interaction (140) | |||||||||
Map_info | Map | II | Position | -2.98517 | Error | 0.001881 | |||
Positive | Positive_clone | F11G11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |