WormBase Tree Display for Gene: WBGene00016825
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| WBGene00016825 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C50E10.1 | |||||||
| Molecular_name | C50E10.1 | ||||||||
| C50E10.1.1 | |||||||||
| CE28141 | |||||||||
| Other_name | C50E10.i | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_C50E10.1 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | C50E10.1 | ||||||||
| DB_info | Database | AceView | gene | 2M592 | |||||
| WormQTL | gene | WBGene00016825 | |||||||
| WormFlux | gene | WBGene00016825 | |||||||
| NDB | locus_tag | CELE_C50E10.1 | |||||||
| NCBI | gene | 174873 | |||||||
| RefSeq | protein | NM_064210.5 | |||||||
| TREEFAM | TREEFAM_ID | TF319496 | |||||||
| TrEMBL | UniProtAcc | A3QM99 | |||||||
| UniProt_GCRP | UniProtAcc | A3QM99 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (59) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00157579 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||
| WBGene00066245 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
| WBGene00127919 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
| WBGene00087097 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
| chrII_pilon.g6131 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00007408 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00008914 | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including I5 neuron; cholinergic neurons; germ line; retrovesicular ganglion; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including mut-16; nuo-6; and atfs-1 based on microarray; RNA-seq; and tiling array studies. Is affected by twenty-nine chemicals including methylmercury hydroxide; methylmercuric chloride; and rotenone based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C50E10.1 | |||||||
| Corresponding_transcript | C50E10.1.1 | ||||||||
| Other_sequence | FG621219.1 | ||||||||
| FG621235.1 | |||||||||
| FG621242.1 | |||||||||
| Associated_feature | WBsf224055 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00012210 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030026 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042892 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022662 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042891 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023155 | ||||||||
| Expr1146868 | |||||||||
| Expr2001817 | |||||||||
| Expr2020043 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (232) | |||||||||
| Interaction | WBInteraction000029964 | ||||||||
| WBInteraction000220660 | |||||||||
| WBInteraction000224008 | |||||||||
| WBInteraction000275888 | |||||||||
| WBInteraction000294581 | |||||||||
| WBInteraction000302286 | |||||||||
| WBInteraction000432600 | |||||||||
| WBInteraction000447524 | |||||||||
| WBInteraction000454373 | |||||||||
| WBInteraction000459425 | |||||||||
| Map_info | Positive | Positive_clone | C50E10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 7.65854 | |||||||
| Method | Gene |
