WormBase Tree Display for Gene: WBGene00016807
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WBGene00016807 | SMap | S_parent | Sequence | C50D2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | txt-1 | Person_evidence | WBPerson19237 | |||||
Sequence_name | C50D2.3 | ||||||||
Molecular_name | C50D2.3 | ||||||||
C50D2.3.1 | |||||||||
CE08888 | |||||||||
Other_name | CELE_C50D2.3 | Accession_evidence | NDB | BX284602 | |||||
Public_name | txt-1 | ||||||||
DB_info | Database | AceView | gene | 2A397 | |||||
WormQTL | gene | WBGene00016807 | |||||||
WormFlux | gene | WBGene00016807 | |||||||
NDB | locus_tag | CELE_C50D2.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016807|UniProtKB=O44797 | |||||||
family | PTHR31327 | ||||||||
NCBI | gene | 183651 | |||||||
RefSeq | protein | NM_061260.3 | |||||||
TREEFAM | TREEFAM_ID | TF319103 | |||||||
TrEMBL | UniProtAcc | O44797 | |||||||
UniProt_GCRP | UniProtAcc | O44797 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 28 Jan 2020 11:43:42 | WBPerson1983 | Name_change | CGC_name | txt-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | txt | ||||||||
Allele (21) | |||||||||
Strain | WBStrain00051496 | ||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (20) | |||||||||
Paralog (14) | |||||||||
Structured_description | Automated_description | Enriched in germ line; serotonergic neurons; and in male based on RNA-seq; tiling array; and single-cell RNA-seq studies. Is affected by several genes including mut-16; nuo-6; and atfs-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including methylmercuric chloride; manganese chloride; and D-glucose based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: PDZ domain; PDZ superfamily; and Uncharacterized protein T15H9.4-like. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C50D2.3 | |||||||
Corresponding_transcript | C50D2.3.1 | ||||||||
Other_sequence | CJC12790_1 | ||||||||
Associated_feature | WBsf1011345 | ||||||||
WBsf220722 | |||||||||
Experimental_info | RNAi_result | WBRNAi00042885 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00060471 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00030023 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00060472 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012204 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00060469 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00060470 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3620 | ||||||||
Expr1018556 | |||||||||
Expr1146861 | |||||||||
Expr2001811 | |||||||||
Expr2020037 | |||||||||
Drives_construct | WBCnstr00027790 | ||||||||
Construct_product | WBCnstr00011545 | ||||||||
WBCnstr00027790 | |||||||||
Microarray_results (17) | |||||||||
Expression_cluster (119) | |||||||||
Interaction (29) | |||||||||
Map_info | Map | II | Position | -16.1401 | |||||
Positive | Positive_clone | C50D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00065013 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |