WormBase Tree Display for Gene: WBGene00016781
expand all nodes | collapse all nodes | view schema
WBGene00016781 | SMap | S_parent | Sequence | C49G7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | phat-7 | Person_evidence | WBPerson625 | |||||
Sequence_name | C49G7.3 | ||||||||
Molecular_name | C49G7.3 | ||||||||
C49G7.3.1 | |||||||||
CE08861 | |||||||||
Other_name | CELE_C49G7.3 | Accession_evidence | NDB | BX284605 | |||||
Public_name | phat-7 | ||||||||
DB_info | Database | AceView | gene | 5E525 | |||||
WormQTL | gene | WBGene00016781 | |||||||
WormFlux | gene | WBGene00016781 | |||||||
NDB | locus_tag | CELE_C49G7.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016781|UniProtKB=O16226 | |||||||
family | PTHR21724 | ||||||||
NCBI | gene | 178810 | |||||||
RefSeq | protein | NM_071729.7 | |||||||
TREEFAM | TREEFAM_ID | TF317956 | |||||||
TrEMBL | UniProtAcc | O16226 | |||||||
UniProt_GCRP | UniProtAcc | O16226 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 10 Sep 2020 13:33:49 | WBPerson1983 | Name_change | CGC_name | phat-7 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | phat | ||||||||
Allele (30) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (43) | |||||||||
Paralog (63) | |||||||||
Structured_description | Automated_description | Enriched in germ line; intestine; mc3; mechanosensory neurons; and pharyngeal gland cell based on proteomic; tiling array; microarray; and single-cell RNA-seq studies. Is affected by several genes including cyc-1; cyd-1; and hyl-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including Ethanol; rotenone; and D-glucose based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: ShK domain-like and ShKT domain. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C49G7.3 | |||||||
Corresponding_transcript | C49G7.3.1 | ||||||||
Other_sequence | CR03476 | ||||||||
CRC01770_1 | |||||||||
CR08290 | |||||||||
CBC05945_1 | |||||||||
Associated_feature | WBsf231631 | ||||||||
WBsf231632 | |||||||||
WBsf231633 | |||||||||
Experimental_info | RNAi_result | WBRNAi00042822 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029989 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1011258 | ||||||||
Expr1146803 | |||||||||
Expr2001786 | |||||||||
Drives_construct | WBCnstr00027807 | ||||||||
Construct_product | WBCnstr00027807 | ||||||||
Microarray_results (15) | |||||||||
Expression_cluster (222) | |||||||||
Interaction (42) | |||||||||
Map_info | Positive | Positive_clone | C49G7 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | V | -6.85079 | |||||||
Reference | WBPaper00041771 | ||||||||
WBPaper00058224 | |||||||||
Method | Gene |