WormBase Tree Display for Gene: WBGene00016211
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| WBGene00016211 | SMap | S_parent | Sequence | C29F5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | sdz-3 | Paper_evidence | WBPaper00024645 | ||||||
| Person_evidence | WBPerson374 | |||||||||
| Sequence_name | C29F5.2 | |||||||||
| Molecular_name | C29F5.2 | |||||||||
| Other_name | CELE_C29F5.2 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | sdz-3 | |||||||||
| DB_info | Database | AceView | gene | 2G589 | ||||||
| WormQTL | gene | WBGene00016211 | ||||||||
| WormFlux | gene | WBGene00016211 | ||||||||
| NDB | locus_tag | CELE_C29F5.2 | ||||||||
| NCBI | gene | 183010 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 19 Aug 2005 17:08:06 | WBPerson2970 | Name_change | CGC_name | sdz-3 | |||||
| 3 | 30 Jun 2014 14:08:08 | WBPerson1983 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | sdz | |||||||||
| Allele (21) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Paralog | WBGene00007179 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00007306 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| WBGene00009143 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| WBGene00011491 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| WBGene00018127 | Caenorhabditis elegans | From_analysis | TreeFam | |||||||
| Structured_description | Automated_description | Enriched in I2L; body wall muscle cell; germ line; muscle cell; and in male based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including cyd-1; cye-1; and mut-16 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including methylmercuric chloride; rifampin; and Doxycycline based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| WBPaper00067038 | ||||||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | |||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | C29F5.2:wp112 | ||||||||
| C29F5.2:wp244 | ||||||||||
| Corresponding_pseudogene | C29F5.2 | |||||||||
| Associated_feature | WBsf657675 | |||||||||
| WBsf657676 | ||||||||||
| Experimental_info | Expr_pattern | Expr1014747 | ||||||||
| Expr1145500 | ||||||||||
| Microarray_results (11) | ||||||||||
| Expression_cluster (91) | ||||||||||
| Interaction | WBInteraction000348360 | |||||||||
| WBInteraction000365611 | ||||||||||
| WBInteraction000405074 | ||||||||||
| Map_info | Map | II | Position | -0.385885 | Error | 0.000758 | ||||
| Positive | Positive_clone | C29F5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
