WormBase Tree Display for Gene: WBGene00016058
expand all nodes | collapse all nodes | view schema
WBGene00016058 | SMap | S_parent | Sequence | C24D10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nspd-3 | Person_evidence | WBPerson1983 | |||||
Sequence_name | C24D10.7 | ||||||||
Molecular_name | C24D10.7 | ||||||||
C24D10.7.1 | |||||||||
CE16879 | |||||||||
Other_name | CELE_C24D10.7 | Accession_evidence | NDB | BX284604 | |||||
Public_name | nspd-3 | ||||||||
DB_info | Database | AceView | gene | 4F928 | |||||
WormQTL | gene | WBGene00016058 | |||||||
WormFlux | gene | WBGene00016058 | |||||||
NDB | locus_tag | CELE_C24D10.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00016058|UniProtKB=G5EG23 | |||||||
family | PTHR35375 | ||||||||
NCBI | gene | 259569 | |||||||
RefSeq | protein | NM_068329.5 | |||||||
TREEFAM | TREEFAM_ID | TF319437 | |||||||
TrEMBL | UniProtAcc | G5EG23 | |||||||
UniProt_GCRP | UniProtAcc | G5EG23 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 03 Oct 2006 09:54:23 | WBPerson2970 | Name_change | CGC_name | nspd-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nspd | ||||||||
Allele | WBVar01499754 | ||||||||
WBVar01499395 | |||||||||
WBVar01499396 | |||||||||
WBVar01894107 | |||||||||
WBVar01894108 | |||||||||
WBVar01499242 | |||||||||
WBVar01499633 | |||||||||
WBVar01500245 | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (99) | |||||||||
Paralog | WBGene00010633 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00012781 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00017808 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00017386 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00022754 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00021280 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00020860 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00020715 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00043147 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Enriched in several structures, including amphid sheath cell; germ line; intestine; neurons; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including cyc-1; numr-2; and numr-1 based on microarray and RNA-seq studies. Is affected by twenty-nine chemicals including Ethanol; methylmercury hydroxide; and methylmercuric chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C24D10.7 | |||||||
Corresponding_transcript | C24D10.7.1 | ||||||||
Other_sequence | CRC01200_1 | ||||||||
CR01622 | |||||||||
Associated_feature | WBsf230063 | ||||||||
Experimental_info | RNAi_result | WBRNAi00041089 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011109 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00011108 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00041090 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022616 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1017312 | ||||||||
Expr1145125 | |||||||||
Expr2014480 | |||||||||
Expr2032719 | |||||||||
Drives_construct | WBCnstr00028355 | ||||||||
Construct_product | WBCnstr00028355 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (217) | |||||||||
Interaction (211) | |||||||||
Map_info | Map | IV | Position | 1.53533 | |||||
Positive | Positive_clone | C24D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |