WormBase Tree Display for Gene: WBGene00013610
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WBGene00013610 | SMap | S_parent | Sequence | CHROMOSOME_V | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-206 | Person_evidence | WBPerson655 | |||||
Sequence_name | Y102A5C.1 | ||||||||
Molecular_name | Y102A5C.1 | ||||||||
Y102A5C.1.1 | |||||||||
CE19287 | |||||||||
Other_name | CELE_Y102A5C.1 | Accession_evidence | NDB | BX284605 | |||||
Public_name | fbxa-206 | ||||||||
DB_info | Database | AceView | gene | 5R398 | |||||
WormQTL | gene | WBGene00013610 | |||||||
WormFlux | gene | WBGene00013610 | |||||||
NDB | locus_tag | CELE_Y102A5C.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00013610|UniProtKB=G5EDK0 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 180130 | |||||||
RefSeq | protein | NM_074874.8 | |||||||
TREEFAM | TREEFAM_ID | TF315839 | |||||||
TrEMBL | UniProtAcc | G5EDK0 | |||||||
UniProt_GCRP | UniProtAcc | G5EDK0 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 01 Mar 2007 11:55:19 | WBPerson2970 | Name_change | CGC_name | fbxa-206 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (90) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (307) | |||||||||
Paralog (222) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in germ line; germline precursor cell; head mesodermal cell; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including cyc-1; atfs-1; and etr-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including manganese chloride; Sirolimus; and antimycin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: FTH domain; Mos1 transposase, HTH domain; HTH domain in Mos1 transposase; F-box domain; F-box A protein FB224; F-box-like domain superfamily; and Domain of unknown function DUF38/FTH, Caenorhabditis species. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y102A5C.1 | |||||||
Corresponding_transcript | Y102A5C.1.1 | ||||||||
Other_sequence | CR05866 | ||||||||
CRC04463_1 | |||||||||
Associated_feature | WBsf653498 | ||||||||
WBsf669812 | |||||||||
WBsf009368 | |||||||||
WBsf235163 | |||||||||
Experimental_info | RNAi_result | WBRNAi00036448 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007523 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019793 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00055128 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1023405 | ||||||||
Expr1036090 | |||||||||
Expr1158663 | |||||||||
Expr2011517 | |||||||||
Expr2029754 | |||||||||
Drives_construct | WBCnstr00029587 | ||||||||
Construct_product | WBCnstr00029587 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (154) | |||||||||
Interaction (238) | |||||||||
Map_info | Map | V | Position | 11.3488 | Error | 0.001955 | |||
Positive | Positive_clone | Y102A5C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
WBPaper00064898 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |