WormBase Tree Display for Gene: WBGene00013270
expand all nodes | collapse all nodes | view schema
| WBGene00013270 | SMap | S_parent | Sequence | Y57A10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | Y57A10A.31 | |||||||
| Molecular_name | Y57A10A.31 | ||||||||
| Y57A10A.31.1 | |||||||||
| CE43429 | |||||||||
| Other_name | CELE_Y57A10A.31 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | Y57A10A.31 | ||||||||
| DB_info | Database | AceView | gene | 2M589 | |||||
| WormQTL | gene | WBGene00013270 | |||||||
| WormFlux | gene | WBGene00013270 | |||||||
| NDB | locus_tag | CELE_Y57A10A.31 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013270|UniProtKB=Q9NA71 | |||||||
| family | PTHR22770 | ||||||||
| NCBI | gene | 174872 | |||||||
| RefSeq | protein | NM_064208.3 | |||||||
| TREEFAM | TREEFAM_ID | TF321995 | |||||||
| TrEMBL | UniProtAcc | Q9NA71 | |||||||
| UniProt_GCRP | UniProtAcc | Q9NA71 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Dec 2008 10:41:36 | WBPerson1983 | Event | Acquires_merge | WBGene00013271 | ||||
| Acquires_merge | WBGene00013271 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (386) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00099494 | ||||||||
| 00099495 | |||||||||
| 00099496 | |||||||||
| 00099497 | |||||||||
| 00099498 | |||||||||
| 00099499 | |||||||||
| 00099500 | |||||||||
| 00099501 | |||||||||
| 00124124 | |||||||||
| Ortholog (48) | |||||||||
| Structured_description | Automated_description | Predicted to enable ubiquitin binding activity and ubiquitin-protein transferase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein linear polyubiquitination. Predicted to be part of LUBAC complex. Human ortholog(s) of this gene implicated in Gordon Holmes syndrome. Is an ortholog of human RNF216 (ring finger protein 216). | Paper_evidence | WBPaper00065943 | |||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y57A10A.31 | |||||||
| Corresponding_CDS_history | Y57A10A.31:wp198 | ||||||||
| Corresponding_transcript | Y57A10A.31.1 | ||||||||
| Other_sequence | OVC03327_1 | ||||||||
| GO249154.1 | |||||||||
| GO240265.1 | |||||||||
| GO249148.1 | |||||||||
| GO239474.1 | |||||||||
| FC550259.1 | |||||||||
| MA03254 | |||||||||
| MJ03438 | |||||||||
| MH05734 | |||||||||
| AW453467.1 | |||||||||
| Associated_feature | WBsf658301 | ||||||||
| WBsf658302 | |||||||||
| WBsf978536 | |||||||||
| WBsf990045 | |||||||||
| WBsf990046 | |||||||||
| WBsf1013403 | |||||||||
| WBsf1013404 | |||||||||
| WBsf222258 | |||||||||
| WBsf222259 | |||||||||
| Transcription_factor | WBTranscriptionFactor000867 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00037571 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076831 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021093 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057635 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021091 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037570 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057634 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1014373 | ||||||||
| Expr1035924 | |||||||||
| Expr1161044 | |||||||||
| Expr2008019 | |||||||||
| Expr2026260 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction | WBInteraction000547454 | ||||||||
| WBInteraction000549341 | |||||||||
| WBInteraction000570272 | |||||||||
| Map_info | Positive | Positive_clone | Y57A10A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 7.61393 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
