WormBase Tree Display for Gene: WBGene00013236
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| WBGene00013236 | SMap | S_parent | Sequence | Y56A3A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | znf-593 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y56A3A.18 | ||||||||
| Molecular_name | Y56A3A.18 | ||||||||
| Y56A3A.18.1 | |||||||||
| CE22586 | |||||||||
| Other_name | CELE_Y56A3A.18 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | znf-593 | ||||||||
| DB_info | Database | AceView | gene | 3N8 | |||||
| WormQTL | gene | WBGene00013236 | |||||||
| WormFlux | gene | WBGene00013236 | |||||||
| NDB | locus_tag | CELE_Y56A3A.18 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013236|UniProtKB=Q9U239 | |||||||
| family | PTHR46095 | ||||||||
| NCBI | gene | 176624 | |||||||
| RefSeq | protein | NM_067151.7 | |||||||
| SwissProt | UniProtAcc | Q9U239 | |||||||
| TREEFAM | TREEFAM_ID | TF315114 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U239 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 Jan 2021 23:31:38 | WBPerson1983 | Name_change | CGC_name | znf-593 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | znf | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00002514 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00102480 | ||||||||
| 00102481 | |||||||||
| 00102482 | |||||||||
| 00102483 | |||||||||
| 00102484 | |||||||||
| 00102485 | |||||||||
| 00102486 | |||||||||
| Contained_in_operon | CEOP3740 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00013237 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00018151 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | Y56A3A.18 encodes an ortholog of S. cerevisiae BUD20 that may suppress tumorous growth in the germ line by ensuring robust larval germline proliferation; like PRO-1, -2, and -3, Y56A3A.18 is thought to be required for ribosome biogenesis, suggesting a link between biogenesis in the distal sheath and control of cell division in the germ line. | Paper_evidence | WBPaper00028280 | |||||
| WBPaper00028934 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 23 Apr 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable zinc ion binding activity. Predicted to be involved in ribosome biogenesis. Predicted to be located in cytoplasm and nucleus. Expressed in head. Is an ortholog of human ZNF593 (zinc finger protein 593). | Paper_evidence | WBPaper00065943 | ||||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y56A3A.18 | |||||||
| Corresponding_transcript | Y56A3A.18.1 | ||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf034294 | ||||||||
| WBsf978721 | |||||||||
| WBsf994529 | |||||||||
| WBsf994530 | |||||||||
| WBsf227614 | |||||||||
| Transcription_factor | WBTranscriptionFactor001107 | ||||||||
| Experimental_info | RNAi_result (17) | ||||||||
| Expr_pattern | Expr7068 | ||||||||
| Expr1028172 | |||||||||
| Expr1035894 | |||||||||
| Expr1161005 | |||||||||
| Expr2007998 | |||||||||
| Expr2026239 | |||||||||
| Drives_construct | WBCnstr00003094 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (177) | |||||||||
| Map_info | Map | III | Position | 13.4312 | |||||
| Positive | Positive_clone | Y56A3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027740 | ||||||||
| WBPaper00028280 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
