WormBase Tree Display for Gene: WBGene00012354
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WBGene00012354 | SMap | S_parent | Sequence | W09C5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | cox-4 | Person_evidence | WBPerson117 | |||||
WBPerson7169 | |||||||||
Sequence_name | W09C5.8 | ||||||||
Molecular_name | W09C5.8 | ||||||||
W09C5.8.1 | |||||||||
CE20171 | |||||||||
Other_name | CELE_W09C5.8 | Accession_evidence | NDB | BX284601 | |||||
Public_name | cox-4 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 05 Sep 2017 13:25:30 | WBPerson2970 | Name_change | CGC_name | cox-4 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cox | ||||||||
Allele (24) | |||||||||
Strain | WBStrain00037231 | ||||||||
WBStrain00022511 | |||||||||
WBStrain00047268 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00094899 | ||||||||
00094900 | |||||||||
00094901 | |||||||||
00094902 | |||||||||
00094903 | |||||||||
00094904 | |||||||||
00094905 | |||||||||
00094906 | |||||||||
00114270 | |||||||||
00114271 | |||||||||
Ortholog (44) | |||||||||
Structured_description | Concise_description | W09C5.8 encodes the C. elegans ortholog of the cytochrome c oxidase (COX) subunit IV (COX IV); loss of W09C5.8 activity via RNAi results in a shortened life span, reduced fertility, and defects in mitochondrial respiratory chain function. | Paper_evidence | WBPaper00032427 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 08 Nov 2010 00:00:00 | ||||||||
Automated_description | Involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Human ortholog(s) of this gene implicated in mitochondrial complex IV deficiency nuclear type 16. Is an ortholog of human COX4I1 (cytochrome c oxidase subunit 4I1) and COX4I2 (cytochrome c oxidase subunit 4I2). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0070501 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2265) | ||||
Molecular_info | Corresponding_CDS | W09C5.8 | |||||||
Corresponding_transcript | W09C5.8.1 | ||||||||
Other_sequence (131) | |||||||||
Associated_feature | WBsf649714 | ||||||||
WBsf655327 | |||||||||
WBsf220533 | |||||||||
WBsf220534 | |||||||||
WBsf220535 | |||||||||
Experimental_info | RNAi_result (21) | ||||||||
Expr_pattern | Expr1028081 | ||||||||
Expr1035471 | |||||||||
Expr1158573 | |||||||||
Expr2006884 | |||||||||
Expr2025111 | |||||||||
Drives_construct | WBCnstr00029984 | ||||||||
Construct_product | WBCnstr00029984 | ||||||||
Microarray_results (23) | |||||||||
Expression_cluster (110) | |||||||||
Interaction (76) | |||||||||
Map_info | Map | I | Position | 21.6359 | |||||
Positive | Positive_clone | W09C5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (15) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |