WormBase Tree Display for Gene: WBGene00012151
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| WBGene00012151 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | smrn-1 | Person_evidence | WBPerson1185 | |||||
| Sequence_name | VH15N14R.1 | ||||||||
| Molecular_name | VH15N14R.1 | ||||||||
| VH15N14R.1.1 | |||||||||
| CE53945 | |||||||||
| Other_name | CELE_VH15N14R.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | smrn-1 | ||||||||
| DB_info | Database | AceView | gene | 1I356 | |||||
| WormQTL | gene | WBGene00012151 | |||||||
| WormFlux | gene | WBGene00012151 | |||||||
| NDB | locus_tag | CELE_VH15N14R.1 | |||||||
| NCBI | gene | 24104962 | |||||||
| RefSeq | protein | NM_001380750.1 | |||||||
| TREEFAM | TREEFAM_ID | TF322979 | |||||||
| TrEMBL | UniProtAcc | G5EF10 | |||||||
| UniProt_GCRP | UniProtAcc | G5EF10 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Oct 2024 23:24:44 | WBPerson51134 | Name_change | CGC_name | smrn-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smrn | ||||||||
| Allele (11) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (14) | |||||||||
| Paralog | WBGene00077552 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| WBGene00044439 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044200 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00021188 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Automated_description | Enriched in several structures, including ciliated neurons; enteric muscle; interneuron; pharyngeal gland cell; and vulval muscle based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including swsn-1; rsr-2; and csr-1 based on tiling array; RNA-seq; and microarray studies. Is affected by ten chemicals including rotenone; D-glucose; and allantoin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | VH15N14R.1 | |||||||
| Corresponding_CDS_history | VH15N14R.1:wp193 | ||||||||
| VH15N14R.1:wp226 | |||||||||
| VH15N14R.1:wp274 | |||||||||
| Corresponding_transcript | VH15N14R.1.1 | ||||||||
| Associated_feature | WBsf984280 | ||||||||
| WBsf984281 | |||||||||
| WBsf1010145 | |||||||||
| WBsf219817 | |||||||||
| Experimental_info | Expr_pattern | Expr1020834 | |||||||
| Expr1035376 | |||||||||
| Expr1158016 | |||||||||
| Expr2006646 | |||||||||
| Expr2024863 | |||||||||
| Microarray_results (12) | |||||||||
| Expression_cluster (137) | |||||||||
| Interaction | WBInteraction000230732 | ||||||||
| WBInteraction000290142 | |||||||||
| WBInteraction000387226 | |||||||||
| Map_info | Positive | Positive_clone | VH15N14R | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | 2.3566 | |||||||
| Reference | WBPaper00058259 | ||||||||
| Method | Gene |
