WormBase Tree Display for Gene: WBGene00011661
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WBGene00011661 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | ztf-27 | Person_evidence | WBPerson1997 | |||||
Sequence_name | T09F3.1 | ||||||||
Molecular_name | T09F3.1 | ||||||||
T09F3.1.1 | |||||||||
CE35906 | |||||||||
Other_name | CELE_T09F3.1 | Accession_evidence | NDB | BX284602 | |||||
Public_name | ztf-27 | ||||||||
DB_info | Database | AceView | gene | 2K679 | |||||
WormQTL | gene | WBGene00011661 | |||||||
WormFlux | gene | WBGene00011661 | |||||||
NDB | locus_tag | CELE_T09F3.1 | |||||||
NCBI | gene | 188340 | |||||||
RefSeq | protein | NM_063834.5 | |||||||
TREEFAM | TREEFAM_ID | TF351206 | |||||||
TrEMBL | UniProtAcc | G5EDA0 | |||||||
UniProt_GCRP | UniProtAcc | G5EDA0 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 18 Apr 2008 09:32:24 | WBPerson2970 | Name_change | CGC_name | ztf-27 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ztf | ||||||||
Allele (49) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00012825 | ||||||||
00012826 | |||||||||
00012827 | |||||||||
00012828 | |||||||||
00012829 | |||||||||
Ortholog (23) | |||||||||
Paralog | WBGene00012988 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WBGene00003380 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00013240 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00013970 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00022592 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T09F3.1 | |||||||
Corresponding_CDS_history | T09F3.1:wp111 | ||||||||
Corresponding_transcript | T09F3.1.1 | ||||||||
Other_sequence | FD514145.1 | ||||||||
Acan_isotig12474 | |||||||||
EX553699.1 | |||||||||
CRC02234_1 | |||||||||
Dviv_isotig25115 | |||||||||
Tcol_isotig16304 | |||||||||
Oden_isotig22175 | |||||||||
ACC19088_1 | |||||||||
CSC01618_1 | |||||||||
CR03973 | |||||||||
Associated_feature (12) | |||||||||
Transcription_factor | WBTranscriptionFactor001056 | ||||||||
Experimental_info | RNAi_result | WBRNAi00052967 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00023584 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023308 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00035396 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023818 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00024106 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00018504 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1011767 | ||||||||
Expr1035133 | |||||||||
Expr1156570 | |||||||||
Expr2018198 | |||||||||
Expr2036335 | |||||||||
Drives_construct | WBCnstr00030491 | ||||||||
Construct_product | WBCnstr00030491 | ||||||||
WBCnstr00038837 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (89) | |||||||||
Interaction | WBInteraction000029026 | ||||||||
WBInteraction000052369 | |||||||||
WBInteraction000384547 | |||||||||
WBInteraction000530339 | |||||||||
Map_info | Map | II | Position | 2.54225 | Error | 0.008949 | |||
Positive | Positive_clone | T09F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |