WormBase Tree Display for Gene: WBGene00011604
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| WBGene00011604 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | depd-5 | Person_evidence | WBPerson45398 | |||||
| WBPerson7032 | |||||||||
| Sequence_name | T08A11.1 | ||||||||
| Molecular_name (24) | |||||||||
| Other_name | CELE_T08A11.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | depd-5 | ||||||||
| DB_info | Database | AceView | gene | 3F338 | |||||
| WormQTL | gene | WBGene00011604 | |||||||
| WormFlux | gene | WBGene00011604 | |||||||
| NDB | locus_tag | CELE_T08A11.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011604|UniProtKB=G5EBK0 | |||||||
| family | PTHR13179 | ||||||||
| NCBI | gene | 175548 | |||||||
| RefSeq | protein | NM_001381826.1 | |||||||
| TrEMBL | UniProtAcc | G5EBK0 | |||||||
| UniProt_GCRP | UniProtAcc | G5EBK0 | |||||||
| OMIM | gene | 614191 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 May 2024 17:38:16 | WBPerson51134 | Name_change | CGC_name | depd-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | depd | ||||||||
| Allele (179) | |||||||||
| Strain | WBStrain00003718 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00009099 | ||||||||
| 00009100 | |||||||||
| 00009101 | |||||||||
| 00009102 | |||||||||
| 00009103 | |||||||||
| 00009104 | |||||||||
| 00113597 | |||||||||
| 00113598 | |||||||||
| Contained_in_operon | CEOP3164 | ||||||||
| Ortholog (43) | |||||||||
| Structured_description | Automated_description | Predicted to contribute to GTPase activator activity. Predicted to be involved in cellular response to amino acid starvation; negative regulation of TORC1 signaling; and positive regulation of autophagy. Predicted to be located in lysosomal membrane. Predicted to be part of GATOR1 complex. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy and focal epilepsy. Is an ortholog of human DEPDC5 (DEP domain containing 5, GATOR1 subcomplex subunit). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
| Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112202 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18423) | ||||
| DOID:0081421 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18423) | ||||||
| Molecular_info | Corresponding_CDS | T08A11.1a | |||||||
| T08A11.1b | |||||||||
| T08A11.1c | |||||||||
| T08A11.1d | |||||||||
| T08A11.1e | |||||||||
| T08A11.1f | |||||||||
| T08A11.1g | |||||||||
| T08A11.1h | |||||||||
| Corresponding_CDS_history | T08A11.1:wp275 | ||||||||
| Corresponding_transcript | T08A11.1a.1 | ||||||||
| T08A11.1b.1 | |||||||||
| T08A11.1c.1 | |||||||||
| T08A11.1d.1 | |||||||||
| T08A11.1e.1 | |||||||||
| T08A11.1f.1 | |||||||||
| T08A11.1g.1 | |||||||||
| T08A11.1h.1 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf666762 | ||||||||
| WBsf666763 | |||||||||
| WBsf992074 | |||||||||
| WBsf226499 | |||||||||
| Experimental_info | RNAi_result (6) | ||||||||
| Expr_pattern | Chronogram729 | ||||||||
| Expr6636 | |||||||||
| Expr1010739 | |||||||||
| Expr1035115 | |||||||||
| Expr1156418 | |||||||||
| Expr2005986 | |||||||||
| Expr2024201 | |||||||||
| Drives_construct | WBCnstr00004153 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (45) | |||||||||
| Map_info | Positive | Positive_clone | T08A11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -3.38571 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
