WormBase Tree Display for Gene: WBGene00010793
expand all nodes | collapse all nodes | view schema
WBGene00010793 | SMap | S_parent | Sequence | LLC1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nspg-9 | Person_evidence | WBPerson18244 | |||||
Sequence_name | LLC1.2 | ||||||||
Molecular_name | LLC1.2a | ||||||||
LLC1.2a.1 | |||||||||
CE16261 | |||||||||
LLC1.2b | |||||||||
CE44649 | |||||||||
LLC1.2c | |||||||||
CE46503 | |||||||||
LLC1.2b.1 | |||||||||
LLC1.2c.1 | |||||||||
Other_name | CELE_LLC1.2 | Accession_evidence | NDB | BX284604 | |||||
Public_name | nspg-9 | ||||||||
DB_info | Database | AceView | gene | 4P227 | |||||
WormQTL | gene | WBGene00010793 | |||||||
WormFlux | gene | WBGene00010793 | |||||||
NDB | locus_tag | CELE_LLC1.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00010793|UniProtKB=O17954 | |||||||
family | PTHR34311 | ||||||||
NCBI | gene | 178386 | |||||||
RefSeq | protein | NM_001268878.2 | |||||||
NM_001268880.3 | |||||||||
NM_001268879.3 | |||||||||
TREEFAM | TREEFAM_ID | TF315792 | |||||||
TrEMBL | UniProtAcc | O17954 | |||||||
G3MU72 | |||||||||
D3YT80 | |||||||||
UniProt_GCRP | UniProtAcc | O17954 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 10 Jul 2021 01:08:06 | WBPerson1983 | Name_change | CGC_name | nspg-9 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nspg | ||||||||
Allele (147) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (24) | |||||||||
Paralog | WBGene00009883 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WBGene00018951 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00021321 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00021325 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00011592 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00022490 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00021805 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00017591 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00021322 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WBGene00011856 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Automated_description | Enriched in several structures, including germ line; head mesodermal cell; intestine; neurons; and rectal gland cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including cyd-1; swsn-2.2; and nuo-6 based on microarray; proteomic; and RNA-seq studies. Is affected by twenty-five chemicals including methylmercuric chloride; rotenone; and mianserin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | LLC1.2a | |||||||
LLC1.2b | |||||||||
LLC1.2c | |||||||||
Corresponding_transcript | LLC1.2a.1 | ||||||||
LLC1.2b.1 | |||||||||
LLC1.2c.1 | |||||||||
Other_sequence | CJC07560_1 | ||||||||
FD514885.1 | |||||||||
CBC09583_1 | |||||||||
CRC09500_1 | |||||||||
CJC00585_1 | |||||||||
MJ00051 | |||||||||
Associated_feature (13) | |||||||||
Experimental_info | RNAi_result | WBRNAi00001286 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00050708 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00017081 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023538 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00034329 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (5) | |||||||||
Microarray_results (24) | |||||||||
Expression_cluster (227) | |||||||||
Interaction (50) | |||||||||
Map_info | Map | IV | Position | 12.1168 | |||||
Positive | Positive_clone | LLC1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |