WormBase Tree Display for Gene: WBGene00010199
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| WBGene00010199 | SMap | S_parent | Sequence | F57C7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | bet-2 | Person_evidence | WBPerson552 | |||||
| WBPerson2693 | |||||||||
| Sequence_name | F57C7.1 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_F57C7.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | bet-2 | ||||||||
| DB_info | Database | AceView | gene | XL193 | |||||
| WormQTL | gene | WBGene00010199 | |||||||
| WormFlux | gene | WBGene00010199 | |||||||
| NDB | locus_tag | CELE_F57C7.1 | |||||||
| Panther | gene | CAEEL|WormBase=F57C7.1d|UniProtKB=A0A0K3AWB8 | |||||||
| family | PTHR22880 | ||||||||
| NCBI | gene | 181257 | |||||||
| RefSeq | protein | NM_001313423.6 | |||||||
| NM_001313424.6 | |||||||||
| NM_077369.7 | |||||||||
| NM_001381085.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF317345 | |||||||
| TrEMBL | UniProtAcc | Q20947 | |||||||
| Q20948 | |||||||||
| A0A0K3AWB8 | |||||||||
| A0A0K3ASR2 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0K3AWB8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Feb 2010 10:02:48 | WBPerson2970 | Name_change | CGC_name | bet-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bet | ||||||||
| Allele (106) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00001142 | ||||||||
| 00001143 | |||||||||
| 00001144 | |||||||||
| 00001145 | |||||||||
| 00001146 | |||||||||
| Ortholog (21) | |||||||||
| Paralog | WBGene00001470 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00009180 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017423 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019217 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021636 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022473 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in chromatin remodeling and regulation of DNA-templated transcription. Predicted to be located in chromatin and nucleus. Human ortholog(s) of this gene implicated in azoospermia; oligospermia; and spermatogenic failure 21. Is an ortholog of human BRDT (bromodomain testis associated). | Paper_evidence | WBPaper00065943 | |||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57C7.1a | |||||||
| F57C7.1b | |||||||||
| F57C7.1c | |||||||||
| F57C7.1d | |||||||||
| Corresponding_CDS_history | F57C7.1a:wp80 | ||||||||
| F57C7.1a:wp83 | |||||||||
| Corresponding_transcript | F57C7.1a.1 | ||||||||
| F57C7.1b.1 | |||||||||
| F57C7.1c.1 | |||||||||
| F57C7.1d.1 | |||||||||
| Other_sequence | JI465848.1 | ||||||||
| JI459569.1 | |||||||||
| JI164612.1 | |||||||||
| CBC17428_1 | |||||||||
| CRC11781_1 | |||||||||
| CR00240 | |||||||||
| Oden_isotig18475 | |||||||||
| CR08490 | |||||||||
| CRC01573_1 | |||||||||
| JI164553.1 | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048859 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00048858 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010816 | ||||||||
| Expr1034452 | |||||||||
| Expr1152608 | |||||||||
| Expr2009616 | |||||||||
| Expr2027854 | |||||||||
| Drives_construct | WBCnstr00031587 | ||||||||
| Construct_product | WBCnstr00031587 | ||||||||
| Microarray_results (33) | |||||||||
| Expression_cluster (169) | |||||||||
| Interaction (45) | |||||||||
| Map_info | Map | X | Position | 2.25719 | Error | 0.007806 | |||
| Positive | Positive_clone | F57C7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003938 | ||||||||
| WBPaper00027258 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
