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WormBase Tree Display for Gene: WBGene00010082

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Name Class

WBGene00010082SMapS_parentSequenceF55A11
IdentityVersion1
NameSequence_nameF55A11.11
Molecular_nameF55A11.11
F55A11.11.1
CE33795
Other_nameCELE_F55A11.11Accession_evidenceNDBBX284605
Public_nameF55A11.11
DB_infoDatabaseAceViewgene5M265Co
5M265
WormQTLgeneWBGene00010082
WormFluxgeneWBGene00010082
NDBlocus_tagCELE_F55A11.11
PanthergeneCAEEL|WormBase=WBGene00010082|UniProtKB=Q86D20
familyPTHR16469
NCBIgene3565838
RefSeqproteinNM_001383411.2
TREEFAMTREEFAM_IDTF319225
TrEMBLUniProtAccQ86D20
UniProt_GCRPUniProtAccQ86D20
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (17)
RNASeq_FPKM (74)
Ortholog (24)
ParalogWBGene00008259Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009962Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010079Caenorhabditis elegansFrom_analysisTreeFam
WBGene00017279Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020321Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionF55A11.11 encodes a member of the histidine phosphatase superfamilyorthologous to Bombyx mori ecdysteroid phosphate phosphatase (EPP),human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736); F55A11.11lacks the consensus sequence for phosphatase activity, and thus ispredicted to be catalytically inactive; F55A11.11 is also paralogous toC. elegans C52E4.7, F09C12.8, F53B6.7, and T07F12.1; loss of F55A11.11activity via large-scale RNAi results in no obvious defects.Paper_evidenceWBPaper00029177
Curator_confirmedWBPerson567
WBPerson1843
Date_last_updated04 Apr 2007 00:00:00
Automated_descriptionEnriched in FLPL; head mesodermal cell; and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including numr-2; numr-1; and mut-16 based on tiling array; microarray; and RNA-seq studies. Is affected by twelve chemicals including methylmercuric chloride; allantoin; and Sirolimus based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domains: Histidine phosphatase superfamily, clade-1; Histidine phosphatase superfamily (branch 1); Histidine phosphatase superfamily; and Phosphorylation site.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS292 version of WormBase
Date_last_updated24 Apr 2024 00:00:00
Molecular_infoCorresponding_CDSF55A11.11
Corresponding_transcriptF55A11.11.1
Other_sequence (24)
Associated_featureWBsf232548
WBsf232549
Experimental_infoRNAi_resultWBRNAi00002169Inferred_automaticallyRNAi_primary
WBRNAi00008166Inferred_automaticallyRNAi_primary
WBRNAi00048407Inferred_automaticallyRNAi_primary
WBRNAi00015679Inferred_automaticallyRNAi_primary
Expr_patternExpr1018261
Expr1034401
Expr1152196
Expr2004191
Expr2022411
Drives_constructWBCnstr00031682
Construct_productWBCnstr00031682
Microarray_results (30)
Expression_cluster (109)
Map_infoPositivePositive_cloneF55A11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV3.38091
ReferenceWBPaper00028498
WBPaper00038491
WBPaper00055090
MethodGene