WormBase Tree Display for Gene: WBGene00010082
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WBGene00010082 | SMap | S_parent | Sequence | F55A11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | F55A11.11 | |||||||
Molecular_name | F55A11.11 | ||||||||
F55A11.11.1 | |||||||||
CE33795 | |||||||||
Other_name | CELE_F55A11.11 | Accession_evidence | NDB | BX284605 | |||||
Public_name | F55A11.11 | ||||||||
DB_info | Database | AceView | gene | 5M265Co | |||||
5M265 | |||||||||
WormQTL | gene | WBGene00010082 | |||||||
WormFlux | gene | WBGene00010082 | |||||||
NDB | locus_tag | CELE_F55A11.11 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00010082|UniProtKB=Q86D20 | |||||||
family | PTHR16469 | ||||||||
NCBI | gene | 3565838 | |||||||
RefSeq | protein | NM_001383411.2 | |||||||
TREEFAM | TREEFAM_ID | TF319225 | |||||||
TrEMBL | UniProtAcc | Q86D20 | |||||||
UniProt_GCRP | UniProtAcc | Q86D20 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (17) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (24) | |||||||||
Paralog | WBGene00008259 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00009962 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00010079 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00017279 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00020321 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | F55A11.11 encodes a member of the histidine phosphatase superfamilyorthologous to Bombyx mori ecdysteroid phosphate phosphatase (EPP),human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736); F55A11.11lacks the consensus sequence for phosphatase activity, and thus ispredicted to be catalytically inactive; F55A11.11 is also paralogous toC. elegans C52E4.7, F09C12.8, F53B6.7, and T07F12.1; loss of F55A11.11activity via large-scale RNAi results in no obvious defects. | Paper_evidence | WBPaper00029177 | |||||
Curator_confirmed | WBPerson567 | ||||||||
WBPerson1843 | |||||||||
Date_last_updated | 04 Apr 2007 00:00:00 | ||||||||
Automated_description | Enriched in FLPL; head mesodermal cell; and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including numr-2; numr-1; and mut-16 based on tiling array; microarray; and RNA-seq studies. Is affected by twelve chemicals including methylmercuric chloride; allantoin; and Sirolimus based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domains: Histidine phosphatase superfamily, clade-1; Histidine phosphatase superfamily (branch 1); Histidine phosphatase superfamily; and Phosphorylation site. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F55A11.11 | |||||||
Corresponding_transcript | F55A11.11.1 | ||||||||
Other_sequence (24) | |||||||||
Associated_feature | WBsf232548 | ||||||||
WBsf232549 | |||||||||
Experimental_info | RNAi_result | WBRNAi00002169 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00008166 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00048407 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00015679 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1018261 | ||||||||
Expr1034401 | |||||||||
Expr1152196 | |||||||||
Expr2004191 | |||||||||
Expr2022411 | |||||||||
Drives_construct | WBCnstr00031682 | ||||||||
Construct_product | WBCnstr00031682 | ||||||||
Microarray_results (30) | |||||||||
Expression_cluster (109) | |||||||||
Map_info | Positive | Positive_clone | F55A11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | V | 3.38091 | |||||||
Reference | WBPaper00028498 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Method | Gene |