WormBase Tree Display for Gene: WBGene00010056

WBGene00010056 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 2
    Name: CGC_name: smc-6 Person_evidence: WBPerson203
            WBPerson98
      Sequence_name: F54D5.14
      Molecular_name: F54D5.14
        F54D5.14.1
        CE46466
      Other_name: CELE_F54D5.14 Accession_evidence: NDB BX284602
      Public_name: smc-6
    DB_info: Database: AceView gene 2L871
        WormQTL gene WBGene00010056
        WormFlux gene WBGene00010056
        NDB locus_tag CELE_F54D5.14
        Panther gene CAEEL|WormBase=WBGene00010056|UniProtKB=G5EG17
          family PTHR19306
        NCBI gene 174776
        RefSeq protein NM_064075.9
        SwissProt UniProtAcc G5EG17
        TREEFAM TREEFAM_ID TF314520
        UniProt_GCRP UniProtAcc G5EG17
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 21 Jun 2010 13:32:14 WBPerson2970 Name_change: CGC_name: smc-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: smc
    Allele (67)
    Strain: WBStrain00033084
      WBStrain00040714
    RNASeq_FPKM (74)
    GO_annotation (22)
    Contained_in_operon: CEOP2564
    Ortholog (40)
    Paralog: WBGene00007694 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00016151 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in double-strand break repair via homologous recombination. Located in condensed nuclear chromosome and nucleoplasm. Is an ortholog of human SMC6 (structural maintenance of chromosomes 6). Paper_evidence: WBPaper00065943
            WBPaper00067038
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS296 version of WormBase
          Date_last_updated: 20 Mar 2025 00:00:00
  Molecular_info: Corresponding_CDS: F54D5.14
    Corresponding_CDS_history: F54D5.14:wp227
    Corresponding_transcript: F54D5.14.1
    Other_sequence (18)
    Associated_feature: WBsf644704
      WBsf644705
      WBsf222162
      WBsf222163
      WBsf222164
  Experimental_info: RNAi_result: WBRNAi00103389 Inferred_automatically: RNAi_primary
      WBRNAi00001840 Inferred_automatically: RNAi_primary
      WBRNAi00048310 Inferred_automatically: RNAi_primary
      WBRNAi00007721 Inferred_automatically: RNAi_primary
      WBRNAi00077933 Inferred_automatically: RNAi_primary
      WBRNAi00015617 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9094
      Expr1025530
      Expr1034387
      Expr1152111
      Expr2015901
      Expr2034134
    Drives_construct: WBCnstr00031704
    Construct_product: WBCnstr00031704
    Antibody: WBAntibody00002150
    Microarray_results (19)
    Expression_cluster (160)
    Interaction (147)
  Map_info: Map: II Position: 3.77681 Error: 0.003641
    Positive: Positive_clone: F54D5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027033
    WBPaper00036709
    WBPaper00038491
    WBPaper00044667
    WBPaper00044981
    WBPaper00049394
    WBPaper00055090
    WBPaper00065893
    WBPaper00067170
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene