WormBase Tree Display for Gene: WBGene00007387
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| WBGene00007387 | SMap | S_parent | Sequence | C06H2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | jmjd-5 | Person_evidence | WBPerson260 | |||||
| Sequence_name | C06H2.3 | ||||||||
| Molecular_name | C06H2.3a | ||||||||
| C06H2.3a.1 | |||||||||
| CE05235 | |||||||||
| C06H2.3b | |||||||||
| CE52421 | |||||||||
| C06H2.3b.1 | |||||||||
| Other_name | CELE_C06H2.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | jmjd-5 | ||||||||
| DB_info | Database | AceView | gene | 5L609 | |||||
| WormQTL | gene | WBGene00007387 | |||||||
| WormFlux | gene | WBGene00007387 | |||||||
| NDB | locus_tag | CELE_C06H2.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007387|UniProtKB=Q17765 | |||||||
| family | PTHR12461 | ||||||||
| NCBI | gene | 179543 | |||||||
| RefSeq | protein | NM_073430.4 | |||||||
| NM_001359791.3 | |||||||||
| TrEMBL | UniProtAcc | A0A2I2LDX7 | |||||||
| Q17765 | |||||||||
| UniProt_GCRP | UniProtAcc | Q17765 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Sep 2011 16:40:15 | WBPerson2970 | Name_change | CGC_name | jmjd-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | jmjd | ||||||||
| Allele (33) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP5276 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Automated_description | Predicted to enable chromatin binding activity; histone H3K36 demethylase activity; and peptidyl-arginine 3-dioxygenase activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in breast cancer. Is an ortholog of human KDM8 (lysine demethylase 8). | Paper_evidence | WBPaper00065943 | |||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25840) | ||||
| Molecular_info | Corresponding_CDS | C06H2.3a | |||||||
| C06H2.3b | |||||||||
| Corresponding_transcript | C06H2.3a.1 | ||||||||
| C06H2.3b.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf232464 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00028605 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00064109 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091493 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039952 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117698 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010351 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020704 | ||||||||
| Expr1033180 | |||||||||
| Expr1144027 | |||||||||
| Expr2012892 | |||||||||
| Expr2031126 | |||||||||
| Drives_construct | WBCnstr00033780 | ||||||||
| Construct_product | WBCnstr00033780 | ||||||||
| Regulate_expr_cluster | WBPaper00051338:jmjd-5(tm3735)_downregulated_G0 | ||||||||
| WBPaper00051338:jmjd-5(tm3735)_downregulated_G1 | |||||||||
| WBPaper00051338:jmjd-5(tm3735)_downregulated_G6 | |||||||||
| WBPaper00051338:jmjd-5(tm3735)_upregulated_G0 | |||||||||
| WBPaper00051338:jmjd-5(tm3735)_upregulated_G1 | |||||||||
| WBPaper00051338:jmjd-5(tm3735)_upregulated_G6 | |||||||||
| WBPaper00062156:jmjd-5(zr1234)_downregulated_germline | |||||||||
| WBPaper00062156:jmjd-5(zr1234)_updownregulated | |||||||||
| WBPaper00062156:jmjd-5(zr1234)_upregulated | |||||||||
| WBPaper00062156:jmjd-5(zr1234)_upregulated_germline | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (132) | |||||||||
| SAGE_tag (12) | |||||||||
| Interaction | WBInteraction000293644 | ||||||||
| WBInteraction000416975 | |||||||||
| WBInteraction000567855 | |||||||||
| Map_info | Map | V | Position | 2.95381 | Error | 0.000561 | |||
| Positive | Positive_clone | C06H2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005736 | ||||||||
| WBPaper00038372 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00051338 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058058 | |||||||||
| WBPaper00062156 | |||||||||
| WBPaper00065308 | |||||||||
| WBPaper00067184 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
