WormBase Tree Display for Gene: WBGene00007299
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| WBGene00007299 | SMap | S_parent | Sequence | C04F12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nssp-7 | Person_evidence | WBPerson260 | |||||
| WBPerson11490 | |||||||||
| WBPerson33426 | |||||||||
| Sequence_name | C04F12.5 | ||||||||
| Molecular_name | C04F12.5 | ||||||||
| C04F12.5.1 | |||||||||
| CE19678 | |||||||||
| C04F12.5.2 | |||||||||
| Other_name | CELE_C04F12.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | nssp-7 | ||||||||
| DB_info | Database | AceView | gene | 1K264 | |||||
| WormQTL | gene | WBGene00007299 | |||||||
| WormFlux | gene | WBGene00007299 | |||||||
| NDB | locus_tag | CELE_C04F12.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007299|UniProtKB=Q9XVE8 | |||||||
| family | PTHR34721 | ||||||||
| NCBI | gene | 182226 | |||||||
| RefSeq | protein | NM_060176.4 | |||||||
| TREEFAM | TREEFAM_ID | TF322207 | |||||||
| TrEMBL | UniProtAcc | Q9XVE8 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XVE8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 14 Jan 2025 23:38:50 | WBPerson51134 | Name_change | CGC_name | nssp-7 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nssp | ||||||||
| Allele | WBVar01498959 | ||||||||
| WBVar01499739 | |||||||||
| WBVar00662291 | |||||||||
| WBVar00662292 | |||||||||
| WBVar00662293 | |||||||||
| WBVar00662294 | |||||||||
| WBVar00250129 | |||||||||
| WBVar01910162 | |||||||||
| WBVar01499786 | |||||||||
| WBVar01499054 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (18) | |||||||||
| Paralog | WBGene00010236 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00018874 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00010239 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00020995 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00017296 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00044446 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00018115 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00045250 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00014125 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in several structures, including germ line; germline precursor cell; intestine; neurons; and ventral nerve cord based on Chronogram; tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including cyc-1; nuo-6; and atfs-1 based on microarray; RNA-seq; tiling array; and proteomic studies. Is affected by sixteen chemicals including rotenone; D-glucose; and stavudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C04F12.5 | |||||||
| Corresponding_transcript | C04F12.5.1 | ||||||||
| C04F12.5.2 | |||||||||
| Other_sequence | CJC03914_1 | ||||||||
| CJC00266_1 | |||||||||
| CR02252 | |||||||||
| CBC00815_1 | |||||||||
| Associated_feature | WBsf984776 | ||||||||
| WBsf984777 | |||||||||
| WBsf220130 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00028442 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00061980 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039632 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram296 | ||||||||
| Expr5145 | |||||||||
| Expr1025318 | |||||||||
| Expr1033147 | |||||||||
| Expr1143728 | |||||||||
| Expr2000412 | |||||||||
| Expr2018636 | |||||||||
| Drives_construct | WBCnstr00003219 | ||||||||
| WBCnstr00033849 | |||||||||
| Construct_product | WBCnstr00033849 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (165) | |||||||||
| Interaction | WBInteraction000228436 | ||||||||
| WBInteraction000229485 | |||||||||
| WBInteraction000258849 | |||||||||
| WBInteraction000353512 | |||||||||
| WBInteraction000370111 | |||||||||
| WBInteraction000398953 | |||||||||
| WBInteraction000412788 | |||||||||
| WBInteraction000457146 | |||||||||
| Map_info | Map | I | Position | 3.85514 | |||||
| Positive | Positive_clone | C04F12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00066405 | ||||||||
| WBPaper00066610 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
