WormBase Tree Display for Gene: WBGene00007184
expand all nodes | collapse all nodes | view schema
| WBGene00007184 | SMap | S_parent | Sequence | B0464 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | ctr-9 | Person_evidence | WBPerson634 | |||||
| Sequence_name | B0464.2 | ||||||||
| Molecular_name | B0464.2a | ||||||||
| B0464.2a.1 | |||||||||
| CE20456 | |||||||||
| B0464.2d | |||||||||
| CE43518 | |||||||||
| B0464.2a.2 | |||||||||
| B0464.2d.1 | |||||||||
| B0464.2d.2 | |||||||||
| Other_name | tpr-3 | Paper_evidence | WBPaper00045991 | ||||||
| CELE_B0464.2 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | ctr-9 | ||||||||
| DB_info | Database | AceView | gene | 3K585 | |||||
| WormQTL | gene | WBGene00007184 | |||||||
| WormFlux | gene | WBGene00007184 | |||||||
| NDB | locus_tag | CELE_B0464.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007184|UniProtKB=Q03560 | |||||||
| family | PTHR14027 | ||||||||
| NCBI | gene | 176335 | |||||||
| RefSeq | protein | NM_001268072.4 | |||||||
| NM_001268071.4 | |||||||||
| SwissProt | UniProtAcc | Q03560 | |||||||
| UniProt_GCRP | UniProtAcc | Q03560 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Mar 2014 11:27:18 | WBPerson2970 | Name_change | CGC_name | ctr-9 | ||||
| 3 | 12 Nov 2014 11:26:03 | WBPerson2970 | Name_change | Other_name | tpr-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ctr | ||||||||
| Allele (65) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00054226 | ||||||||
| 00054227 | |||||||||
| 00054228 | |||||||||
| 00054229 | |||||||||
| 00054230 | |||||||||
| 00054231 | |||||||||
| 00054232 | |||||||||
| 00054233 | |||||||||
| 00054234 | |||||||||
| 00119412 | |||||||||
| Ortholog (36) | |||||||||
| Structured_description | Concise_description | ctr-9 encodes the C. elegans ortholog of mammalian and Saccharomyces cerevisiae CTR9 that is a member of the PAF1 (Polymerase-Associated Factor 1) complex; by homology CTR-9 is predicted to function in the regulation of transcription. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 23 Mar 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in transcription elongation by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of Cdc73/Paf1 complex. Is an ortholog of human CTR9 (CTR9 homolog, Paf1/RNA polymerase II complex component). | Paper_evidence | WBPaper00065943 | ||||||
| WBPaper00067038 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS296 version of WormBase | ||||||||
| Date_last_updated | 20 Mar 2025 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0464.2a | |||||||
| B0464.2d | |||||||||
| Corresponding_CDS_history | B0464.2b:wp246 | ||||||||
| B0464.2c:wp246 | |||||||||
| Corresponding_transcript | B0464.2a.1 | ||||||||
| B0464.2a.2 | |||||||||
| B0464.2d.1 | |||||||||
| B0464.2d.2 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf645492 | ||||||||
| WBsf225576 | |||||||||
| WBsf225577 | |||||||||
| WBsf225578 | |||||||||
| WBsf225579 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039084 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00110706 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001736 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110704 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110705 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117696 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007811 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002571 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1015123 | ||||||||
| Expr1033091 | |||||||||
| Expr1143247 | |||||||||
| Expr2010580 | |||||||||
| Expr2028820 | |||||||||
| Drives_construct | WBCnstr00033939 | ||||||||
| Construct_product | WBCnstr00033939 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction (82) | |||||||||
| Map_info | Map | III | Position | 0.569464 | |||||
| Positive | Positive_clone | B0464 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00043497 | |||||||||
| WBPaper00045133 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059048 | |||||||||
| WBPaper00063960 | |||||||||
| WBPaper00065308 | |||||||||
| WBPaper00065331 | |||||||||
| WBPaper00066805 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
